Conchiformibius kuhniae: LVJ77_02330
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Entry
LVJ77_02330 CDS
T08263
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ckh
Conchiformibius kuhniae
Pathway
ckh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ckh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVJ77_02330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckh03400
]
LVJ77_02330 (mfd)
Enzymes [BR:
ckh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ77_02330 (mfd)
DNA repair and recombination proteins [BR:
ckh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVJ77_02330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
AAA_30
AAA_22
ERCC3_RAD25_C
DUF7267
Motif
Other DBs
NCBI-ProteinID:
XHH50280
UniProt:
A0ABD8B8J0
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All DBs
Position
248837..252232
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AA seq
1131 aa
AA seq
DB search
MVYPLPKPAQKSVWREVSAGSLPYVLAQNLPEGRVKIVLTADNAQARRLHEAWRFFRPQD
NALFFPDWETLPYERFSPHQDLVSERLSVLWQLKNGLADAVFVPVATAMQKLPPMKFLLA
RTFHLRRGMTLPPHVLRANLVEAGYHAADSVLGAGEFAVRGGITDVFPMGGDAPYRLEWF
GDELDTIRRFDPDSQRSLAAADEVRLLPAHEFPTDAPDIFRRRFREEIEGDPSAAVVYNA
VSKGQFGAGAEYYLPLFFEEDCATLFDYAGADALAVCAADVHACAERFWAEVNARFRLAG
GDASYPPLPPQHLWLNADRFAGCLKTLAQVRTAPDARHNLPEIAVNRQSKTPLSALADFC
RDFDGRVLVCADSLGRRETMSAFFAQHGLHARAAAGWDGFLRSDAPLMLAAAPLGEGFRL
PEHGIAVITETELYPHVARAPHHAQRRRKHAAVSDAALRDLAEINVGDPVVHQEHGIGRY
AGLANMDFGEGGSEMMLLEYAGGAQLYVPVSQLHLISRYAGGNRDNVSLHKLGHAAWSKA
KRKAAEQARDTAAELLDLYARRAAREGLSCEWDEQSYQAFADGFGYEETEDQAAAIAAVL
RDLAHSKPMDRLVCGDVGFGKTEVALRAAFAAVMGGRQVAVLAPTTLLVEQHAKNFAGRF
ADFPVKIGALSRFNNSRDTQTTLAGMADGTVDIVIGTHKLLQDGIAFKNLGLVIIDEEHR
FGVRQKEQLKQLRSNVDLLTLTATPIPRTLSMALDGLRDFSLIATAPSRRLAVKTFVKPF
SEAGIREAVLRELKRGGQVFFLHNEVETIENMRETLETLLPEARIGVAHGQLRERELEQR
MRGFLQQQFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAY
LLTPEAVGRDAEKRLDALAAADELGAGFGLAMQDLEIRGAGEILGEGQSGEMVQVGLTLY
TEMLKQAVRDLKKGRVPDLDAPLRGSTEVKLHAPALLPEDYCPDVHERLVLYKRLAAAET
EKQINDIHEELIDRFGLADAHPPVRTLLDSHRIRLAAHNLGIATVDATAHAVTLVFGSEP
KVSPAALIALVQSGKHYRLLDGGTRLRMDTPTDDAAKRIEAVKTLLRRLQA
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
gtggtttatcctttgcccaagcccgcgcaaaaaagtgtgtggcgggaggtgtctgcgggc
agtttgccctatgttttggcgcagaatctgcccgaaggcagggtcaaaatcgttctgacc
gccgacaacgcccaagcccgccgtttgcacgaggcgtggcggtttttccgtccgcaggac
aacgccttgttttttcccgactgggaaacgctgccgtatgaacgcttttcgccgcatcag
gatttggtgtcggagcgtttgtcggtgttgtggcagttgaaaaacggcttggcggacgcg
gtgttcgtgccggtggcgacggcgatgcagaagctgccgccgatgaaatttttgctggcg
cggacgtttcatttgcggcgcggcatgacgctgccgccgcacgttttgcgggcgaatttg
gtggaagcgggctatcacgcggcggacagcgtgttgggcgcgggcgagtttgccgtgcgc
ggcgggataacggacgtgtttccgatgggcggcgatgcgccctaccgtttggaatggttt
ggcgacgagttggacacgattcgccgttttgaccccgacagccagcgcagtttggcggcg
gcggacgaagtgcgtttgctgcccgcgcacgagtttccaacggacgcgcccgacattttc
cgccgccgttttcgtgaggaaattgagggcgacccgtctgctgcggtggtgtataacgcg
gtttccaaaggacaattcggcgcgggcgcggaatattatctgcctttgttttttgaggaa
gactgcgcgactttgtttgactatgcgggcgcggacgcgctggcggtgtgcgccgccgat
gtccacgcctgcgcggaacgcttttgggcggaggtgaacgcgcgtttccgtttggcgggc
ggcgatgcgtcttatccgcccttgccgccgcagcatttgtggctcaacgccgaccgtttc
gcaggctgcctgaaaaccttggcgcaagtgcgtaccgcgcccgatgcccgccacaatctg
cccgaaattgccgtaaaccgtcagtccaaaacgcctttgtcggcattggcggatttttgc
cgcgactttgacggacgcgtgctggtgtgcgccgacagcttgggacggcgcgaaaccatg
agcgcgtttttcgcccaacacggtttgcacgcccgcgccgccgccggttgggatggcttt
ttgcgcagcgatgcgcccctgatgctggcggccgcgccgcttggcgaaggtttcaggctg
cctgaacacggcatcgccgtgattaccgaaaccgaactctatccccacgtcgcccgcgcc
ccgcaccacgcccaacgccgccgcaaacacgccgccgtgtccgatgccgccctgcgcgat
ttggcggaaatcaatgtcggcgaccccgttgtccatcaggaacacggcatcggacgttac
gcgggcttggcgaatatggacttcggcgagggcggcagcgaaatgatgctgctggaatac
gcgggcggcgcacaactttacgttcccgtgtcgcaactgcacctgattagccgctacgcc
ggcggcaaccgcgacaacgtttccctgcacaaactcggacacgccgcttggagcaaagcc
aaacgcaaagccgctgaacaagcccgcgacaccgccgccgaattgctggatttgtacgcc
cgccgcgccgcccgcgaaggcctgtcctgcgaatgggacgaacaaagctaccaagccttt
gcggacggcttcggctacgaagaaaccgaagaccaagccgccgccatcgccgccgtgttg
cgcgacttggcgcacagcaaaccgatggacaggctggtgtgcggcgatgtcggcttcggc
aaaaccgaagtggcgttacgcgccgcctttgccgccgtgatgggcggacggcaagtcgcc
gtgcttgcccccacgactttgctggtggaacagcacgccaaaaacttcgccggacgtttt
gccgactttcccgtcaaaatcggcgcgctgtcccgcttcaacaacagccgcgacacccaa
accacgctggcgggcatggcagacggcacggtggacatcgttatcggcacgcacaaactc
ttgcaagacggcatcgcctttaaaaacttgggcttggtgattattgacgaagaacaccgc
ttcggcgtgcgccaaaaagaacagctcaaacaactgcgcagcaacgtggatttgctcacc
ctcaccgccacccccattccgcgcaccttgagcatggcattggacggcttgcgcgatttt
tccctgattgccaccgcccccagccgccgccttgccgtcaaaacctttgtcaaaccgttc
agcgaagccggtatccgcgaagccgtgttgcgcgaactcaagcgcggcggacaagtgttt
tttctgcacaacgaagtggaaaccattgaaaatatgcgagaaacattggaaacgctgctg
cctgaagcccgcatcggcgtggcgcacgggcaactgcgcgaacgcgaactggaacagcgt
atgcgcggatttttgcaacagcaattcaacgtcttactctgttccaccatcattgaaacc
ggcattgacattcccaacgccaacaccatcatcatcaaccgcgccgacaaattcggcatc
gcccaactgcaccaactgcgcgggcgcgtgggacgcagccaccatcaggcgtatgcctac
ctgctcacccccgaagcggtcggcagggacgcggaaaaacgtttggacgcgctggcggcg
gcggacgaattgggcgcgggtttcggcttggcgatgcaggacttggaaattcgcggcgcg
ggcgaaattttgggcgaagggcagagcggcgaaatggtgcaggtgggcttgacgctctac
accgaaatgctcaaacaagccgtgcgcgacctgaaaaaagggcgcgtgcccgatttggac
gcgcctttgcgcggcagcaccgaagtgaaattgcacgcgcccgcgctgctgcctgaagat
tattgccccgacgtgcatgaacggctggtgttgtacaaacgccttgccgccgccgaaacc
gagaaacaaatcaacgacattcacgaagaactcatcgaccgtttcggcttggcggacgcg
cacccgcccgtgcgcaccctgctggacagccaccgcatccgtttggcggcgcacaatttg
ggcatcgccacggtggacgcgaccgcgcacgccgttacgctggtgttcggcagcgaaccg
aaagtgtcgcccgccgcgctgattgcgctggtgcagtcgggcaagcattaccgcctgctg
gacggcggcacgcgcctgcgtatggacacgccgacagacgatgccgccaaacggattgaa
gccgtgaaaacgctgctgcggcgtttgcaggcatga
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