Conchiformibius kuhniae: LVJ77_11605
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Entry
LVJ77_11605 CDS
T08263
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ckh
Conchiformibius kuhniae
Pathway
ckh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ77_11605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckh03019
]
LVJ77_11605
03009 Ribosome biogenesis [BR:
ckh03009
]
LVJ77_11605
Enzymes [BR:
ckh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LVJ77_11605
Messenger RNA biogenesis [BR:
ckh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVJ77_11605
Ribosome biogenesis [BR:
ckh03009
]
Prokaryotic type
rRNA processing factors
LVJ77_11605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Motif
Other DBs
NCBI-ProteinID:
UOP04781
UniProt:
A0A8T9MU56
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Position
complement(2094440..2096506)
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AA seq
688 aa
AA seq
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MKRMLFNATHSEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVSRAYFQDYEGGKARIQDVLKEGMQIIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDVPHGMSIIARTAGIGRSVEELQW
DFNYLLQLWRAIEEAANAHKQPYLLFMESSLVIRAIRDYFRPDIGEILVDNQEVYEQVSE
FMSYVMPNNLGRLKLYTDHTPLFSRLQIEQQIETAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEETAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDARNQREVENTL
RDALKKDRARVQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHV
LRLIQDAAMKDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNIHLENPHY
EITRIRNDDVDENAAPSYKRVSKPEAVDNVPFSNSKGEKAARPEPAVKGVKHASPAPTVS
ENRSWWDSFKGWLKKLFGSDSEPAPAAPVKTRPAAKRNNPNRRHNQHGNRSPAYAKNKRP
QHHHKTVSGNGDGDNAATPPAAPKPPRPQRPQPTAQPMPKQPAPVAEAPRTETYRTPSRA
HQAAQTQAATAAQAKALDCPHWRTAKQQ
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaacgccacgcattccgaagaattgcgcgtggcgattgtagac
gggcaaaccctgctggatttggacattgaaacgctgggcaaagaacagcgcaaaggcaat
atctacaaaggcgtgattacccgcatcgagccgtctttggaagcctgcttcgtggattac
ggcaccgaccggcacggttttttgccgtttaaagaagtgtcccgcgcctattttcaggac
tacgaaggcggcaaagcccgcattcaggacgtgctgaaagaaggcatgcaaatcattgtt
caggttgaaaaagacgagcgcggcaacaaaggtgcggcactcaccacctttattagtttg
gcggggcgttatctggtgttgatgcccaacaatccgcgcggcggcggcgtgtcgcggcgc
atcgagggcgaggaacgccaagaactgaaagcggcgatggcggagctggacgtgccgcac
ggcatgagcatcatcgcccgcaccgccggcatcggtcgcagtgtggaagaattgcaatgg
gatttcaattatttgctgcaactgtggcgggcgattgaagaagccgccaacgcccacaaa
cagccctatctgctgtttatggaaagctcgctggtgattcgcgccatccgcgactatttc
cgccccgacatcggcgaaattctggttgataatcaggaagtttacgaacaagtttccgag
tttatgagctatgtgatgcccaataatttgggcaggctgaaactctacaccgaccacacg
cccctgttttcccgtctgcaaatcgagcaacagattgaaaccgcgttttcgcgttccgtc
agcctgccttcgggcggcgcgattgtgattgaccacaccgaagcccttgtttccattgat
gtaaactctgcccgtgccacacgcggcgccgacattgaagaaaccgcgttcaaaaccaat
atggaagcggcggaagaagtggcgcggcaaatgcgtttgcgcgacttgggcggcttggtt
gtcattgattttattgacatggaagacgcgcgtaatcagcgcgaagtggaaaacaccctg
cgcgatgcgctgaaaaaagaccgcgcccgcgtgcaaatgggcaaactgtcgcgcttcggc
ttgctggaattgagccgccaacgcctgcaacctgcgctggcggaaagcagccacattgcc
tgtccgcgctgcgccggtacgggcgtaatccgcagcatcgaatccaccgcgctgcacgtt
ttgcgcctgattcaagacgcggcgatgaaagacaatacgggtgaagttcacgcgcaagtg
cctgttgatgtcgccacttttttgctgaacgaaaaacgcgccgagctgttcggcatggaa
gagcgtttggacgtatccgtgtttctgattccgaacattcatttggaaaatccgcattac
gaaatcacccgcatccgcaacgatgacgtggacgaaaacgccgcgccgagctataagcgc
gtttccaaaccggaagccgttgataatgtgccgttttccaacagcaaaggcgaaaaagcg
gcgcgtcccgaaccggcggtgaaaggcgtgaaacacgcttcgcccgcgccgaccgtgtcg
gaaaaccgttcttggtgggacagcttcaaaggctggctgaaaaaactgttcggcagcgac
agcgaacccgcgcccgccgcgccggtgaaaacccgccccgccgccaagcgcaacaatccc
aaccgccgccacaaccaacacggcaaccgcagtcccgcctacgccaaaaacaaacgcccg
caacaccaccacaaaaccgtgtcgggcaacggcgatggcgacaacgcggcaacgccgccc
gccgcgcccaaaccgccgcgcccccagcgtccgcaaccaacggcgcagccgatgcccaag
cagcccgctcccgttgccgaagcaccgcgcaccgaaacgtaccgcaccccaagccgcgcc
caccaagccgcgcaaacccaagcagcaacagcagcccaagcaaaagcccttgattgtccg
cattggcgcaccgcaaaacagcaataa
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