Conchiformibius kuhniae: LVJ77_12485
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Entry
LVJ77_12485 CDS
T08263
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ckh
Conchiformibius kuhniae
Pathway
ckh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ckh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVJ77_12485 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckh03021
]
LVJ77_12485 (rpoC)
03400 DNA repair and recombination proteins [BR:
ckh03400
]
LVJ77_12485 (rpoC)
Enzymes [BR:
ckh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVJ77_12485 (rpoC)
Transcription machinery [BR:
ckh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVJ77_12485 (rpoC)
DNA repair and recombination proteins [BR:
ckh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVJ77_12485 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XHH49777
UniProt:
A0ABD8B6Y9
LinkDB
All DBs
Position
1479100..1483293
Genome browser
AA seq
1397 aa
AA seq
DB search
MNLTDLFSPLQQAGSEEFDAIKIGIASPDTIRSWSYGEVKKPETINYRTFKPERDGLFCA
KIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLTKVRRERMGHLELAAPVAHIWFLKS
LPSRLGMVLDMTLRDIERVLYFEAFVVTDPGLTTLQRRQLLTEEDYYAKIEEFGEEFDAH
MGAEGVRELLRTMNIEQEIELLRQELQSTGSDTKIKKLAKRLKVLEAFQRSGMKLEWMIM
DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLSDMIKGKSGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFKPFIFHKLEQRELATTVKAAKKLVEQEVAEVWDILEEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTRELVNGKGEGTLFADVKEVHRAYHT
KQVQLGSKITVRLREWVKNEQDEFEPVVKRYETTVGRALLSEILPKGLPFEYVNLSLTKK
AISKLINASFRLCGLRDTVIFADHLMYTGFALAAKGGISICVDDMKVPKEKPALLAAANA
EVREIEDQYQKGLVTNGERYNKVVDIWGDAGDKIAKAMMDNLSKEKVIDRDGNEVYQESF
NSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITANFREGLTVLQYFIATHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTDEGFSMKAVVQGGDIIESLRERI
LGRVAACDIIHPATGATLVEAGTLLDERLVDLIDGSGVDEVKVRTPITCQTRYGLCAKCY
GRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTVR
FSSQMRYIANSKGELIVIGRSCEIVIHDQIGRERERHKVPYGATLKVYDGEELQAGALLA
TWDPHTHPIITEHAGRVEFENVEEGVTVSRQTDETTGLSTLVVIDGKRRMSSASKLLRPT
LRLLDENGEHVMIPGTKTPVSVAFQVGAVIAVREGQDVGKGAVIARIPQATSKTRDITGG
LPRVAELFEARIPKDAGMLAEVTGTVSFGKETKGKQRLVITEPDGVAHETLVSKEKNLLV
HDGQVVNKGETVVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIR
QMLRRVTITDPGDTGFITGEQVERAEVMLANEAAEAEGKAPARFDNVLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLSYHRSRRHAWRTAVK
AALEDESGENTAQASAE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaccgatttgttcagccccctgcaacaggcgggttcggaagaatttgacgcc
atcaaaatcggcatcgcctcgcccgacacgattcgctcgtggtcgtacggcgaagtgaaa
aagccggaaaccatcaactaccgcaccttcaagcccgaacgggacggcttgttctgcgcc
aaaattttcgggccggtgaaagactacgaatgcttgtgcggaaaatacaagcgtttgaaa
ttcaaaggcgtaacctgcgaaaaatgcggcgtggaagttaccctcaccaaagtgcgccgc
gagcgcatggggcatttggagctggccgcgcccgttgcccacatctggtttttgaaatcg
ctgccctcgcgcttgggcatggtgttggacatgaccctgcgcgacatcgagcgcgtgctg
tattttgaagcctttgtggtaaccgaccccggtctgaccaccctgcaacgccgccaactg
ctcaccgaagaagactactacgccaaaattgaagaattcggcgaagagtttgacgcgcac
atgggcgcggagggcgtgcgcgaactgctgcgcaccatgaacatcgagcaggaaatcgag
ctgctgcgccaagaattgcaaagcacgggttcggacaccaaaatcaaaaaactggcgaag
cgtttgaaagtgttggaagccttccaacgttccggcatgaagctggaatggatgattatg
gacgtgctgcctgtattgccgcctgatttgcgcccgcttgtgccgcttgacggcggacgc
tttgccacgtccgatttgaacgatttgtaccgccgtgtcatcaaccgcaacaaccgtttg
aaacgcctgctggaattgcgcgcgcccgacatcattgtccgcaacgaaaaacgtatgctt
caggaagcggtggattcgctgctggacaacggtcggcgcggcaaggcgatgacgggcgcg
aacaaacgtccgcttaaatccttgtccgatatgattaagggcaaaagcggccgtttccgt
caaaacctgctcggcaagcgcgtggactattccggccgttccgtgattaccgtaggtccc
tacctgcgcctgcaccaatgcggtttgccgaaaaaaatggcattggaattgttcaagccg
tttattttccacaaactcgagcagcgcgaactcgccaccaccgtcaaagccgccaaaaaa
ctggtggaacaggaagtggcggaagtgtgggacattctcgaagaagtgattcgcgaacac
ccgattttgctcaaccgtgcgccgaccctgcaccgtttgggcattcaggcgtttgagccg
attttgattgaaggtaaggcgattcagctccacccgctcgtgtgcgccgcgttcaacgcc
gactttgacggcgaccaaatggcggtacacgtgcccttgagcttggaagcgcaaatggaa
gcgcgtaccctgatgctggcttccaacaacgtcctcgcccccgccaacggcgagccgatt
atcgtgccttcgcaagacatcgtcttgggcttgtattacatgacccgcgagctggtgaac
ggcaagggcgaaggcacgctgtttgccgatgtgaaggaagtccaccgcgcctaccacacc
aaacaggtgcagttgggcagcaaaatcaccgtgcgcctgcgcgagtgggtgaaaaacgag
caggacgagtttgaaccggtggtgaaacgctacgaaaccactgtgggacgtgcgctgctg
tctgaaatcctgcccaaaggtttgccgtttgagtatgtgaacctgtcgctgaccaaaaaa
gcgatttccaagctgattaacgcttcgttccgcttgtgcggcctgcgcgacacggtgatt
tttgccgaccatctgatgtacaccggttttgctttggcggccaaaggcggcatttccatc
tgcgtggacgacatgaaagtgccgaaagaaaaacccgcgctgctggctgcggcaaacgcc
gaagtgcgcgaaatcgaagaccaataccaaaaaggtttggtaaccaacggcgaacgctac
aacaaagtggtggacatttggggcgatgccggcgacaaaatcgccaaagccatgatggac
aacctgtccaaagaaaaggtgattgaccgcgacggcaacgaagtgtaccaagagtcgttc
aactccatctacatgatggcggattcgggcgcgcgcggttcggcagcgcaaatcaaacag
ctttccggcatgcgcggtttgatggcgaaaccggatggctcgattatcgaaacgccgatt
accgccaacttccgcgagggcttgacggtattgcaatactttattgccacgcacggtgcg
cgtaaaggcttggcggacaccgcgctgaaaaccgccaactcgggctacctgacccgccgt
ttggtggacgttacccaagatttggtggtggtggaagacgactgcggcacggacgaaggc
ttctccatgaaagcagtggtgcagggcggcgacatcatcgaatcgctgcgcgaacgcatt
ttggggcgcgttgccgcttgcgacatcatccaccccgccaccggcgcgacactggtcgaa
gccggcacgctgctggacgaacgtttggtggacttgattgacggctcgggcgtggacgaa
gtgaaagtacgcaccccgattacctgccaaacccgttacggcctgtgcgccaaatgctac
ggccgcgacttggcacgcggcaaactggtgaacaccggcgaagcggtgggcgtgattgcg
gcgcagtccatcggcgaaccgggcacgcagcttaccatgcgtaccttccacatcggcggt
gcggcatcgcgtgccgccgccgccagccaagtggaagccaaatccaacggcaccgtgcgc
ttctccagccaaatgcgctacatcgccaacagcaaaggcgaactgattgtcatcggacgc
tcctgcgaaatcgtgattcacgaccaaatcgggcgcgagcgcgaacgccacaaagtcccc
tacggcgcgactttgaaagtgtatgacggcgaagagttgcaagcgggcgcactgctggca
acatgggacccgcacacccacccgattatcaccgaacacgccggacgcgtggaatttgaa
aacgtggaagaaggcgttaccgtcagccgtcaaaccgatgaaaccacaggcttgtccaca
ctggtggtgattgacggcaaacggcgcatgtcgtctgccagcaagctgctgcgcccgacc
ctgcgcctgttggacgaaaacggcgaacacgtgatgattccgggaacgaaaacacccgtg
tccgttgccttccaagtcggcgcggtgattgccgtgcgcgaaggtcaggacgtgggcaaa
ggcgcggtgattgcgcggattccgcaggcaacctccaaaacccgcgatattaccggcggt
ctgccgcgtgtggcggagctgtttgaagcgcgtattcccaaagatgcgggcatgctggcg
gaggtaaccggcacggtatcgttcggcaaggaaaccaaaggcaaacaacgtttggtgatt
accgagccggacggcgtggcacacgaaacgctggtgtcgaaagagaaaaacctgctggtg
catgacggccaagtggtgaacaagggcgaaacggtggtggacggcgctgtggatccgcac
gatattctgcgtttgcagggcattgaggcgctggcgcgctacatcgtgcaggaagtgcag
gaagtgtaccgcttgcagggcgtgaaaatctccgacaaacacatcgaggtgattatccgc
caaatgctgcgccgcgtaaccattaccgaccccggcgataccggcttcattaccggcgaa
caggtcgaacgcgccgaagtgatgcttgccaacgaagcggcggaagccgaaggcaaagcc
cccgcccgtttcgacaacgttttgctgggcatcaccaaagcgtctttgtccaccgacagt
tttatttcggcagcatcgttccaagaaaccacgcgcgtgcttaccgaagcggcgattatg
ggcaaaaaagacgatttgcgcggcttgaaggaaaacgtgattgtcggccgtctgattccg
gcaggcacgggcttgagctaccaccgcagccgccgtcatgcgtggcgtacggcagtgaaa
gccgcccttgaagacgaaagcggcgaaaacacggcacaagcgtcagccgaataa
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