Caldicellulosiruptor acetigenus I77R1B: Calkr_0378
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Entry
Calkr_0378 CDS
T01356
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cki
Caldicellulosiruptor acetigenus I77R1B
Brite
KEGG Orthology (KO) [BR:
cki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cki03016
]
Calkr_0378
Enzymes [BR:
cki01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Calkr_0378
Transfer RNA biogenesis [BR:
cki03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Calkr_0378
Prokaryotic type
Calkr_0378
BRITE hierarchy
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GFIT
Motif
Pfam:
TruD
DUF4251
OMP_b-brl_2
Motif
Other DBs
NCBI-ProteinID:
ADQ39931
UniProt:
E4S8M2
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All DBs
Position
423474..424640
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AA seq
388 aa
AA seq
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MKIKVLPEDFVVREKLKLEIKSSGRYKIYLLTKRHWNTVDALRFISKENKIPLEKIGCAG
RKDRHALTFQYISVPREYTINFNKENVKVELIGYSDDFVSPLILEGNFFEITIRKLKNKD
EKVLRRLNEVQQFGFPNYFDDQRFGSTQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKK
EEKQRKKKISELWGDFEKILPLCKTKVERDIIKTLLKGKSRHYLIEALNLIPKEEMSIFL
SAYQSYIWNRTLSSILPYYADLLKPVKGKIMDYLIYTTLSTKSLNSLKNLQIPTVSSKIP
YVSDIVNNAILEILNERGVKPSDFDTKKIKSWYFKSFLRPAIVFPEKLEVSSFEEDDFYE
GYYKLRIKFYLPAGSFATMLIKSLTVLD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
ttgaagattaaggttttgccagaggattttgttgtgagggaaaaacttaagcttgagata
aaatcgtcgggcagatacaagatttatcttttaacaaaaaggcactggaacacggttgat
gctctcaggttcatctcaaaggaaaacaagattccacttgagaagattggctgtgcaggc
agaaaagacagacacgcactcacttttcagtatatttctgtgccaagagaatataccata
aactttaacaaagaaaatgtaaaggtagagcttatagggtattcagatgattttgtatcc
cctttgattctcgaagggaatttttttgaaataacaataagaaaattaaaaaataaggat
gaaaaagttttacgaagactgaatgaagtacagcagtttggctttcccaactactttgac
gaccagcggtttggaagcacccaaagtgaagatgagttcataggcgaaaagatagttaaa
aaacattacaacggtgccctcaaactttactttacaaccattcatcctgaagataaaaag
gaagaaaagcaaaggaagaaaaaaatatctgagctttggggagactttgaaaagatactg
cctctttgtaaaacgaaggtagaaagggatattataaaaactctcttaaaaggcaagagc
aggcactatttaatcgaagcactcaatcttattcctaaggaagaaatgtccatttttctt
tctgcttaccagagctatatatggaacaggactttgagttccattttaccttattatgct
gatttattaaaacctgtaaaaggaaaaattatggactacttgatttacactacactttca
acaaagtctttaaatagcttaaaaaaccttcagatcccaactgtttcatcaaaaataccc
tatgtaagtgatattgtaaataacgctattttagagattttgaatgaaagaggagtaaag
ccttctgactttgatactaagaagattaaaagttggtattttaaatcgtttttaagacct
gccatagtctttccagaaaagcttgaggtttcaagctttgaagaggatgatttttatgaa
gggtattataagctgaggataaaattctaccttcctgcgggttcctttgctacaatgctg
ataaagagtttaacagttttggattga
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