Caldicellulosiruptor acetigenus I77R1B: Calkr_0866
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Entry
Calkr_0866 CDS
T01356
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cki
Caldicellulosiruptor acetigenus I77R1B
Pathway
cki03030
DNA replication
cki03430
Mismatch repair
cki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Calkr_0866
03430 Mismatch repair
Calkr_0866
03440 Homologous recombination
Calkr_0866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cki03032
]
Calkr_0866
03400 DNA repair and recombination proteins [BR:
cki03400
]
Calkr_0866
Enzymes [BR:
cki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Calkr_0866
DNA replication proteins [BR:
cki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Calkr_0866
DNA repair and recombination proteins [BR:
cki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Calkr_0866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
HHH_3
DUF655
RecG_wedge
tRNA_anti-codon
T2SSK
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ADQ40389
UniProt:
E4S4F2
LinkDB
All DBs
Position
934043..938251
Genome browser
AA seq
1402 aa
AA seq
DB search
MSEVAFLPAKPVKIEFDKSSMGLKVYVESIDNLKDIDLIGIEQRFKSLLESCKDVEIKLF
KSKNLTLDELLKKYRWFLFYKISKRCNGLSHFLRECEIVQSSNGLDFLVPNGIRDILFER
KVDVLIKQILSEEFGIVCDVDFKIKDFFIQFDTDEEVEKYLRLSEEKKEEAEKITSEKSE
VETDPTIIFGKKIDERKEVTPISLVKVGTDCVIEGEIFNLEIKETKNQNVLIYKLYITDY
LNSTFVKIVAKKDKIPTSISVGDYVKVEGRVEFDDFEKAVVINAKNINKSQKPERLDTSS
SKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIK
VIYGMECYLIDDGVPVVYNPKEGQGFDSTFVVVDIETTGFDSQRDRIIEIGAVKIENGQI
TDRFSTFVDPEGKIPVRISELTGIYQDMVDKAPKLIDAILEFERFASSSVLVAHNAQFDI
GFLKKAYQECGIIFDYTYIDTLELSRRLLTDLSSYKLNKVAEFLNVELRHHHRADSDAET
TAGIFISLLERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY
SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIEKIAAFYDFLEI
MPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQILK
HNQGYNDVENDPQLYFRTTDEMLKEFEYLGKDACYEVVVENTNKIADMIEDVKPVPDETF
PPKIDGAEEEIYNMTMKKAHEIYGDPLPEIVKARLEKELNSIIKNGFAVMYLIAQKLVSK
SLSDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYVCPNCKYSEFVTDGSVGCGYDLEDK
NCPRCGKKLKKDGHDIPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRA
GTISTVAEKTAHGFVTKYAEEKGLNLHPAEILRLSQGCTGVKRTTGQHPGGLMIVPRDKE
IFDFTPIQHPADSGDKSVITTHFDYHAISGRLLKLDILGHDDPTVIRMLQDLTGVDPRSI
PLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKPKTFAELVRIS
GLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKDSFRIMEDVRKGKG
LKPEDEQLLREHNVPDWYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYF
TVRADDFDYATILKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPV
DLNESDAERFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGKFLSVDDLIRRAKLNKQV
IEILTQYKVLKDLPQTSQLSFF
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggttgcatttttgcctgcaaagcctgtcaagattgagtttgacaaatcaagt
atgggtcttaaggtttatgttgagagcattgataatcttaaagatattgacctcattgga
attgagcaaagattcaagtctcttttagaaagttgcaaagatgttgagataaaacttttc
aaaagcaaaaacctgacgttggacgaacttttgaaaaaatatagatggtttttgttttat
aaaatttcaaaaaggtgtaacggtcttagccattttttgagagaatgcgagattgtgcaa
agttcaaacggcttagattttttggttccaaatggtatcagggatattctttttgaaaga
aaagtagatgtgcttataaagcaaatactgtctgaagagttcggaatagtttgcgacgtg
gattttaagattaaagacttttttatccagtttgacacagacgaggaagtagaaaaatat
ctaaggcttagcgaggaaaagaaagaagaagctgaaaaaattacaagtgaaaagagtgag
gttgagacagacccgaccattatttttggaaaaaagatagatgaaaggaaagaggtaact
cctatttctcttgtcaaagttggtactgattgcgtgattgaaggtgagatttttaacctt
gagataaaagagactaaaaaccagaatgtgctcatatacaagctttacatcacagactat
ttaaattcaacctttgtaaagattgttgccaagaaagataaaattcctacttcaatttct
gtgggagattatgttaaggtcgaaggcagggtagagtttgacgattttgaaaaagctgtt
gtgataaatgctaaaaacataaacaaaagtcaaaaacctgagcggcttgatacaagcagc
agtaaaagagttgaacttcacgctcacaccaaaatgtctgcaatggatgctgtgtgctct
gcagaagaattaataaagttggcagcttcaatggggcacagagcagttgcgataacagac
catggagttgtccaggcgtttccggaagcacaggaggccagcaaaagctgtaatatcaaa
gttatctatgggatggaatgctatcttattgatgatggcgtgccagttgtttacaatcct
aaggaggggcaaggatttgactctacctttgtggttgttgatattgaaacaacggggttt
gacagtcaaagagatagaataatagaaattggcgctgtgaagatagaaaacggtcaaatt
acagatagattttctacatttgttgaccctgaaggcaaaatccctgtgaggatatcagag
ctaacaggcatctaccaggacatggttgacaaggcacccaaactcattgatgctattttg
gaatttgaaaggtttgcaagtagcagcgttcttgttgcgcacaatgcgcagtttgacatt
ggatttttgaaaaaggcatatcaagaatgtggaattatattcgactatacatatatcgat
acgctggaactttcaagaaggcttttgacagatctgtcttcttataagttaaacaaagtg
gcagagtttttaaatgtagagttgaggcatcatcacagagctgattctgacgctgaaaca
acagctggtatctttatttcccttttagaaagattaaaagcaagagggtacaaatggtta
aaagagcttaattcaattgagtcaaacgcaaaggcagacctcaaatctcatagttatcat
gcaaccatacttgtaaagaaccagcagggattgaaaaacctatataagctggtgtcatac
tctcatttagaatacttctacaaaaggccaaggatacccaaaagtcttttgatacagtta
aaggatggacttttgattggaagtgcgtgtgagtctggtgaaattttcagggcctttttg
gaaggaaaaagtgaggaagagatagaaaagatagcagcattttatgatttccttgagata
atgccggttgagaataattcttttttgattagagaaggatatttgaaagatgaagaagat
ttaagagaaatcaataaaaagatttacaatcttggcaaaaagcttggcaaacttgttgtt
gcaacatcagatgcccactactgtcatccgcaccaaagggttttgcgccagattttgaaa
cacaaccagggttacaatgatgttgagaatgacccgcagctttatttcaggacaacagat
gaaatgctcaaagaatttgagtatctgggtaaggacgcttgttatgaagttgttgtagaa
aataccaataagattgctgacatgatagaagatgtaaaaccagtacccgatgagaccttc
ccgcccaagattgatggtgctgaggaagaaatatacaacatgacaatgaagaaagctcac
gaaatatatggagaccctcttccggaaattgtaaaagcacggcttgaaaaggaactgaat
tcgataatcaagaatggttttgcagtgatgtatttgattgcccaaaaacttgtatctaaa
tctttgtcagacggttatcttgttggttcgcgaggatctgttggttcttctcttgttgca
acaatgtgtgggataacagaggtaaatccactgccgccgcattacgtttgtccaaactgc
aagtattctgagtttgtaacagatggttctgttggatgtggttatgacttagaagacaaa
aactgtccacgctgcggaaaaaaacttaaaaaagatgggcacgacataccgtttgagacc
ttcttgggatttgatggggataaagaacctgatattgaccttaacttttctggtgattat
cagccaattgcacacaagtttacagaggagctgtttggacaaggttatgttttcagagca
ggtacaatctcaacagttgctgaaaagactgcgcacgggtttgtgacaaaatatgctgag
gaaaaaggtttgaatcttcatcctgcagagattttgaggctctctcagggctgtacggga
gtaaaaagaacaacaggccagcaccctggggggcttatgattgtcccaagagacaaggag
atatttgattttacaccaatccagcatccggcagatagcggggacaaaagtgttatcaca
acacactttgattatcatgctatctcaggaaggcttttaaaacttgatattcttggacac
gacgacccgactgtcataagaatgctccaggacttgacaggggttgacccgcgttcaata
ccgcttgacgacaaggctactatgtcaatttttacaagcacagaagctcttggaatttct
ccggaggacatagattgtgaagtgggaaccttcggtataccagaattcgggacaaggttt
gtaaggcagatgctaattgagacaaagccaaagacgtttgctgagcttgtgcgaatttct
ggactttcgcacggtacaaatgtgtggacaaacaatgctcaggatttagtaagaaatgga
attgcaacgctcaaagaggtaatttctacaagagacgacatcatgttatatttgattcaa
aaaggtgttccgccaaaagatagtttcaggataatggaagatgtcagaaaaggtaaagga
ttaaagccggaggatgagcagcttctaagagaacacaatgttccagattggtatatagag
agctgcaaaaagataacgtacatgtttccaaaagcacatgctgcagcgtatgtaatgatg
gcgttcaggattgcttattttaaagtgcattacaaagaagctttctatgcaacgtatttt
acagtcagagcagacgactttgattatgcaacaatcctcaagggaagagatgctataagg
cagaaaataagagatttagaaaacaggataagcagcctttctcagaaagacaaaaacctt
ctgacagtacttgagattgcaaacgagatgttagcacgaggtctgaagttttaccctgtt
gatttgaacgagtctgatgcagagaggttcatcataaaagatggagggcttttaataccc
tttaatgctctgccaaatgttggggtggcagctgcaaaaagtattgtggaggcgcgaaaa
gaaggaaagtttttgtctgtggatgaccttataagacgtgcaaagctgaacaagcaggtt
atagagattttgactcagtataaagtgttaaaagacttgcctcaaacaagtcagctaagc
tttttctaa
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