Caldicellulosiruptor acetigenus I77R1B: Calkr_1505
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Entry
Calkr_1505 CDS
T01356
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cki
Caldicellulosiruptor acetigenus I77R1B
Pathway
cki03410
Base excision repair
cki03430
Mismatch repair
cki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Calkr_1505
03430 Mismatch repair
Calkr_1505
03440 Homologous recombination
Calkr_1505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cki03400
]
Calkr_1505
DNA repair and recombination proteins [BR:
cki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Calkr_1505
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Calkr_1505
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Calkr_1505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADQ41004
UniProt:
E4S9D5
LinkDB
All DBs
Position
complement(1562080..1564476)
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AA seq
798 aa
AA seq
DB search
MIFQKKRWVLKDNSNLENMDIEINGRKIKHQIIKVLNNRGIQEKGDIEKFLSPSLKNLHN
PFLLNDMNEAVKIIHEAILHKSRVLIYGDYDCDGVTSTYLLYSNLRNFLPTSYYIPNRFK
DGYGLNLDVLKKLEDKFDILITVDTGISSHNEVKYLKEKGKTIIITDHHEPKEVLPEADA
VINPKRKDSIYPFRDLAGVGVAFKLLHALKSSGINLKLSEYLDVVAIGTIADVMPLVDEN
RVFAKFGLKILKNTKNIGLQKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRISDANLAM
SLLLQQDSSLAENIARRLDAENRKRQEIEEKTIKEAQSLIMKNKNILKKKIFVLSNSAWH
AGVVGIASSKITEKYYRPSLLLTLSDEGVLKGSGRSIKGFNLFEALKSCSEILLKFGGHE
HAAGLSLPVDNIEKLDEILNSIAQDYHFMIFKPAIEVDLVLSLNEIDDELIDQVYLLEPF
GVGNPEPTFLIKNLVVENFRFMGEDNKYYKFFTGNSTKYDVVCFSNLEDEDELISMKKVD
IVCKLERNLFNSVRKNQFNIIDICENVSFGVIKDLYNNLKAIRECNLNFKRYELNRGSLQ
EIENKKCIFVAFYPHIVLNFLKFLKGEDVEGEFFEFLNKQGRIIQHQSSLKEVYFDDIFA
TRLDKLNLLKDEADLIVALDVPSYQFVKNFYPDVDVVILNLDNKFDGFALQINEECVNVY
KTFRTCEFISYNFSGIYESDPFLKVVKLLFIVQMFEEAGLILAEVTHEGIEVKEFYKAQE
KVNLKSTKVYNFYETLKG
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcagaagaaaagatgggttttaaaagataatagtaatcttgaaaatatggat
attgaaattaatggcagaaaaataaaacatcaaattataaaggttttgaacaatagagga
atccaagaaaaaggagatatagagaagtttttaagtccctctttaaagaaccttcacaat
ccctttcttttgaatgacatgaacgaggcagttaaaataatacacgaggctattttgcac
aaaagcagagtattaatatatggtgattatgattgcgatggagtcacaagtacatatctg
ctttattcaaacttgagaaatttcttacccacaagctattacattcccaatagatttaaa
gatggatatggacttaaccttgatgttttaaagaaactggaggataagtttgatatacta
ataactgttgatacaggtatcagtagccataatgaggtaaagtatctaaaagagaaagga
aaaaccattataatcacagaccatcatgaaccgaaagaagttttgccagaggctgatgct
gtgataaatcccaaaagaaaagatagcatttatcccttcagagatttggcgggcgtgggt
gttgcgttcaagcttttacatgcactcaaaagctcagggataaatcttaaactatctgag
taccttgatgttgttgcaattggtacaattgcagatgttatgcctcttgttgatgagaac
agggtttttgcaaagtttggtcttaagattttgaagaatacaaaaaatattgggcttcaa
aaactcatagaggttgctgggctttcttcaaaagaagagctaaagccttatgatgtttcg
tttataattggtccaagactaaatgcggctggccgaatttctgatgcaaatttggccatg
tcacttcttttgcagcaggatagcagcctggcagaaaatattgcaagaagacttgatgcg
gaaaacagaaagcgtcaggaaatagaagaaaagacaattaaagaagctcagagcttgata
atgaaaaacaagaacattctcaagaaaaagatatttgttcttagcaacagtgcatggcat
gctggtgttgttggaatagcctcttcaaagataacagaaaagtattacagaccttcgctt
ttgctgacactttctgatgagggagttttaaaaggttctggaaggtcaataaaagggttt
aacttgtttgaagctttgaagagctgttctgaaattttgctaaaatttggtggacatgaa
catgcagcaggcctttccctgcctgttgacaatatcgaaaagcttgatgagattttgaat
tctattgcacaggactaccattttatgatatttaagccagcaattgaggttgaccttgta
ctatctttaaatgagattgatgatgagctgattgaccaggtttatctattagagccgttt
ggggttggcaatcctgagccaacgtttttgatcaagaatcttgttgtggaaaattttagg
tttatgggtgaagacaataagtactacaagttttttacaggcaactcaacaaaatatgat
gttgtgtgcttttcaaacttggaagatgaggatgagctaatttcaatgaaaaaggttgat
attgtttgcaagcttgaaagaaatctttttaactctgtgaggaaaaatcagttcaatatt
attgacatttgtgaaaatgttagttttggagtgataaaagacctttacaataatctaaaa
gccataagggagtgtaacttaaactttaaaaggtatgaactgaacagaggcagcttgcaa
gagattgaaaataaaaaatgcatctttgtagccttttatccacatattgttctcaatttt
ctcaaattcttaaaaggagaagatgtggagggtgaattttttgaatttttaaataaacag
ggtagaataattcagcatcaaagtagcctcaaagaggtgtattttgatgatatctttgca
acaagacttgataagttaaatcttctaaaagatgaagcagatttgattgttgcgcttgac
gtaccttcgtatcagtttgttaagaacttctacccagatgttgatgtagttatacttaac
ttggataacaaatttgatgggtttgcgttacaaattaatgaagaatgtgtgaatgtctac
aaaacctttagaacgtgtgagtttatatcttacaatttttcgggtatatatgaatcagat
ccatttttgaaggtagtaaaactgctttttattgtccaaatgtttgaagaggcaggtctc
attttggcagaggttactcatgagggaattgaggtaaaagagttttataaggcacaggaa
aaggtgaacctaaagtctacaaaagtgtacaacttttacgaaactttgaaaggataa
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