Clostridium kluyveri DSM 555: CKL_0435
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Entry
CKL_0435 CDS
T00564
Name
(GenBank) Predicted ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ckl
Clostridium kluyveri DSM 555
Pathway
ckl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKL_0435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckl03019
]
CKL_0435
03009 Ribosome biogenesis [BR:
ckl03009
]
CKL_0435
Enzymes [BR:
ckl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKL_0435
Messenger RNA biogenesis [BR:
ckl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKL_0435
Ribosome biogenesis [BR:
ckl03009
]
Prokaryotic type
rRNA helicases
CKL_0435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
SWI2_SNF2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
EDK32489
UniProt:
A5N5A8
LinkDB
All DBs
Position
complement(406721..408166)
Genome browser
AA seq
481 aa
AA seq
DB search
MDKLNFKDFQLSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAI
PICEKIEIEEKNPQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLK
QRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTT
LLFSATIPDEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPYKFSLLNKIIYTE
RPDSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLICTD
IAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKIEEY
FHITIKEGSIPSLEEVETGKKLFYEKLKSAPKRKEDKSTKFNRDITKIYISAGKRKKIRP
RDVAGTISSIPGVNPEDIGIIDIKDNFSYVDILFGKAEMVLEGLQHKTIKGKTIRAEKAQ
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggataaattaaattttaaagattttcaattaagtaatactatattagaatcattacaa
aaacttggatataattctccctctgaagttcaagaaaaagttatacccctaattttaaaa
aataaagacattatagtgaaatcacaaacaggcagtggaaaaaccgcagcttttgcaata
ccaatctgtgaaaaaatagaaatagaagagaaaaatccacaggcattggtgcttactcct
acaagagaacttgcccttcagattaaagaagatttttcatacattggaaggttaaaaaag
ataaactgtactgctgtattcggcaaggaacctataagccttcaaataaaaaaactaaaa
caaagagttcatgtggtaactggaaccccaggaagaattttggatcatatagaaagaaat
actttagtccttgaaaaaataaaatatttagttatagatgaagcagatgaaatgctaagt
agaggatttatggaacaggtggaatccgttataggcagtcttcctaagaatagaactact
cttctcttttctgcaactatccctgatgaaatactaaaattatgcaatgtatatatggaa
aatccactcaacatagaggttcagtgtgaaagctcagtaaaagacagaataacacaaatg
tactacaaaatagaagcaccttataaattttctctattgaataaaataatatatactgaa
agaccagacagttccatgatattttgcagaactaagaagaacgtagatgatttagttcta
caaatgaaagctagaaagtattcctgtgaggctcttcatggaggaatgcttcaaaatgaa
agaattgataaaatcgaaagctttaaaagaggggaatttacttttcttatatgtacagat
atagccgccagaggaatcgatgtggaaaatataacccacataataaattatgatatacct
atggaaagggaaaactacattcacagaataggacgaacaggacgttttacaagtaatgga
actgccataacttttgttactcctaaagaatatctctatttgaaaaagatagaagaatat
tttcatattactattaaagaaggcagtattccctctttagaagaagttgaaacaggaaaa
aagctattttatgaaaaacttaaatctgcacctaaacggaaagaagataaatcaacaaaa
ttcaacagagatattacaaaaatatatataagtgcaggtaaaaggaaaaaaatacgacct
agagatgtggcaggtaccatttcaagtattcctggggtaaatcctgaagatattggaata
atagatataaaggataatttttcctacgtggatatactttttggtaaagctgaaatggtt
ctcgaaggacttcaacataaaaccataaagggtaaaacaatacgagctgaaaaagcacaa
aagtag
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