Clostridium kluyveri DSM 555: CKL_3331
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Entry
CKL_3331 CDS
T00564
Name
(GenBank) Predicted RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ckl
Clostridium kluyveri DSM 555
Pathway
ckl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKL_3331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckl03019
]
CKL_3331
03009 Ribosome biogenesis [BR:
ckl03009
]
CKL_3331
Enzymes [BR:
ckl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKL_3331
Messenger RNA biogenesis [BR:
ckl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKL_3331
Ribosome biogenesis [BR:
ckl03009
]
Prokaryotic type
rRNA helicases
CKL_3331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
EDK35334
UniProt:
A5N2I8
LinkDB
All DBs
Position
3379519..3381093
Genome browser
AA seq
524 aa
AA seq
DB search
MKNISFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGA
PMLSKITPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLK
RGINIVVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQT
LLFSATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRILDV
DEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVAT
DVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEK
FTKSKIKRKDIPTIDEIFEAKYKNIEEKIKKVISENNYKNFIPIATELDEEYNLVDVAAS
LMKIIFDKELSFDYKENSIGIEDNNVRLFFSIGRMDNITPRKLIKFINETSSVEAYEIGD
IDILNKFTFINVPERVASIILKKSNGKKLQSRRVSVELAKSKKN
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattagttttaacgatttaaatttacatcctaaggtttttgaggccatagat
aatatgggatttgaagaaccatcacaaattcaagcagaatctattcctgtaatattggaa
ggaaatgatattataggtcaagcacaaacaggtactgggaaaactttagcttttggagca
ccaatgttaagcaaaataactcctaaaaacaaacatatttctgcccttatactcactcct
acaagagaactagctattcaagtcaatgatgaattatctagaatcgctaaatttatgaaa
atattattactccctatatacggtggtcaacccatagaaagacaaataaaatccttaaaa
agaggtataaacatagtagtaggtacccctggaagaatactagatcaccttcacagaaaa
acccttgatttaagtaacatagaatttttaacaatagatgaagcagatgaaatgctggat
atgggatttatagaagatatagaagaaataataaaagcctcaaacccaaacagacagact
ctactcttttccgccactatgccagatcaagttaaaagattagcttccaagtatatgagt
tcaaatacaaaatatataacaatagctaaaaatacactaactgtagagaaaacaaaacaa
tattactatgaaataaaacacaaggacagatttgaatctttgtgtagaattttagacgta
gatgaaccttcaagtgctataatattttgtaaaaccaaacgtggtgtggatgaattagtg
gaaagtatgcaggccagaggatataacgtagaaggcatgcacggcgacatggggcaaaat
cagagactaaatactctcagaaaattcaaagaaggttctttggactttttagtagctaca
gatgtggctgcaagaggtatagatgtagaaaatgtttcccatgttataaattacgatctt
ccacaagatacggaatcctatgtacatagaataggtagaacaggaagagccaataaagaa
ggtattgcttattctctggtaacccctagagagtatatattattaaagcagatagaaaag
ttcactaaaagtaaaataaaaagaaaagacatacctactatagatgaaatatttgaagcc
aaatataaaaacatagaagaaaaaatcaaaaaagttatatcagaaaacaattataaaaac
tttattcctatagctacagaactagatgaagagtataacctggtagatgtagcggcctct
ctcatgaaaataatttttgacaaggagttaagttttgattataaagaaaattccataggt
atagaagataataatgtaagattattcttctccataggaagaatggataatataactccg
agaaaattgataaaatttataaatgaaacttcttcagtagaagcatatgaaataggtgat
atagatatattaaacaaatttacttttataaatgttcctgaaagggtggcatctattata
ttaaagaaatccaatggtaaaaaacttcaaagcagaagagtttctgtagaacttgcaaaa
agcaagaaaaattaa
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