Clostridium kluyveri DSM 555: CKL_3560
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Entry
CKL_3560 CDS
T00564
Symbol
dnaE
Name
(GenBank) DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ckl
Clostridium kluyveri DSM 555
Pathway
ckl03030
DNA replication
ckl03430
Mismatch repair
ckl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ckl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKL_3560 (dnaE)
03430 Mismatch repair
CKL_3560 (dnaE)
03440 Homologous recombination
CKL_3560 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckl03032
]
CKL_3560 (dnaE)
03400 DNA repair and recombination proteins [BR:
ckl03400
]
CKL_3560 (dnaE)
Enzymes [BR:
ckl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKL_3560 (dnaE)
DNA replication proteins [BR:
ckl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKL_3560 (dnaE)
DNA repair and recombination proteins [BR:
ckl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKL_3560 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
MA3
Motif
Other DBs
NCBI-ProteinID:
EDK35551
UniProt:
A5N355
LinkDB
All DBs
Position
complement(3605929..3609405)
Genome browser
AA seq
1158 aa
AA seq
DB search
MGDKKYKWVSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAK
AQGIKPIIGCEIYVSQKSMYVKQNNGENGNYHLVLLVKNKEGYKNLMKIVSTASIEGFYY
KPRVDHDYLREHSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLELQY
HGIEEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQRMR
YPSDEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGIDPYEY
MKELCYKGLKKRYKNIDDNLINRLEYELDIIKKMGYVDYFLIVWDFISFAVQNGIMTGPG
RGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFCYERRGEVIDYVVGK
YGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTILNITIDKALEINPEL
KGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYVPLQKNEGNIVTQFTM
NTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNIDYDDKAVYDMIGQGKTVG
VFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYIKNKNSVHEINYVTPQLE
HILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVMEEERRNFIYGIVDE
NGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYAVVAFQTAYLMHYYPTEF
TAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTVEDGRIRFGLSAVKNVGE
NIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAGAFDCFGKYRSQLSLVYE
KIIDSVINSRKKNIKGQISLFSQIEDSSIEIQYPSIKEFMKRDMLSMEKEMTGLYLSGHP
LDEYEKTLKLQTDTKISDIITRETLEESFIEESRVRDGDKVIIGGILSQVSRKITKNNDM
MAFARLEDLYGIMEIIIFSKNFQRFKSLIYDDSMVLVKGRISIREEEQPKLICEIIEPLM
RIDTEKLYILIKEQQDIRNTLKEVKPLLINFSGSVPVYLCTQKERKKFRLDRDLWVKSDP
DLMGILKKRFGDSNVKII
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgggtgataaaaaatataaatgggtaagcctgcaccagcatacagaatactctctctta
gattcttcagccaaaatttcagaacttatagccagagctaaggaattagagatggacagc
attgctataacagatcatgggagtatgtatggttgtgtggagttctataaagaagctaaa
gcacagggaattaaacctataatagggtgtgaaatatatgtatcccaaaagtctatgtat
gtaaaacaaaataatggggaaaatgggaactatcacttagtactcttggtaaaaaataaa
gaaggatataaaaatttgatgaaaatagtttctacagcttctattgaaggattttattat
aaaccaagagtagaccatgactatctaagggaacatagtgaagggttaatagcattaagt
gcctgcatgagtggtgaagtacaggcgaatatactgaaagataatataaagacagctaag
gaaatagctcttttttaccaaaagatatttaaagaaggattttaccttgaacttcaatat
catggtatagaagaacaactgaaaataaaccaggaactgatatccatgtcaaaagaactt
aatattcctttagttgcaacaaatgatgtacactatataagaaaagaggattataggtct
catgatgttttgctttgtatacagacagggaaaactgtggacgaagaacagaggatgaga
tatccttcagatgaattttatttaaaatctccagaacaaatgtatgaaatgttttctcat
gtgccagaggctctggaaaatacagttaaaatagcagaccagtgcagttttgactatgag
tttcacaattcaaaactacctaaatttcctcttaaagaaggtatagacccttatgagtat
atgaaagaactgtgttataaggggcttaaaaaaagatataagaatatagatgacaattta
ataaatagactggaatatgagttagatataataaagaaaatgggatatgtagattatttt
ttaatagtttgggattttataagttttgccgtgcaaaatggaattatgacaggaccgggc
aggggcagcggagctggctcaatagttgcatatacccttggaattactaaagtagatccc
ataaaatataacctcatatttgaacgtttcttgaatccagagagaatatccatgccggat
attgatagtgacttttgttatgagagaagaggggaagtcatagattatgtagtgggaaag
tacggtaaaaacaatgtatcacaaattgtaacttttggaaccatggccgccagagcatgt
ataagagatgtgggaagggcaatgaattacccttatggagaagtagatagaatagctaaa
atgattcctacaatcttaaatataactatagataaggcccttgaaattaatcctgaactt
aaaggagcctatgaagaggagcttagaactaaagagttaatagatgtagcaagagcgctt
gaaggacttccaagacatacgtctacccatgcggcaggagtggttatagcttcaaaacct
ttagtaaattatgtacccctccagaaaaatgaaggtaatatagtaactcaattcactatg
aatacattagaggaacttggtctcttaaaaatggactttttaggacttagaaccttgaca
gttttaagggatgctctaaccatgattaaagaaaataagggaaaaagcattgatttagat
aacatagattatgatgataaagcagtgtatgatatgataggacagggaaaaactgtagga
gtttttcaacttgaatctccgggaatgacctctttcatgaaagaattgaaaccagattct
ctggaggatataatagccggaatcagcctttatagaccgggacctatagctgaaatacca
aaatatattaaaaataaaaatagtgttcatgaaattaattatgtaaccccccagcttgaa
catatactatctgttacttatgggtgcatggtgtatcaagaacaggtaatgcagattgta
agagatctggcaggttactccatgggaagaagtgatctggtaaggcgtgcaatgtctaag
aaaaagcaccatgttatggaagaggaaaggcgtaactttatatatggaatagtagatgaa
aatggaaaagtagaagtacctggatgtataagaaacggcatatctgaaaaggctgccaat
gatatatttgattccatgatagattttgcatcctatgcatttaacaaatcacatgctgct
gcttatgctgtagtggcattccagacagcatatctaatgcattattatcctacagaattt
acagcggcaatgctaaacagtgtaaaaggcgatagtgaaaaggtggcgtattatataaga
tttgcaaaaggcattggaatagaagtactacctcctagtattaatgaaagttatgcaaaa
tttacagtagaagatggcagaataagatttggattgtctgctgtaaaaaatgttggagaa
aatataatagacagtatagttaaatctagattaaaacatggtaaatttaaagatttagtg
gatttttgtagtaatatagagatacaatcaataaataaaagagtggtggaaagcttaatt
aaggcaggagcttttgattgctttggaaaatatcgttcacaattgagtttagtatatgaa
aaaataattgacagtgtcataaattcaaggaaaaaaaatataaaaggacagataagtctt
ttttctcagatagaagacagcagtatagaaatacaatacccttctataaaagaatttatg
aaaagagatatgctgtccatggaaaaggaaatgacgggtttgtatctttcaggtcatcct
ttagatgagtatgagaaaactttaaaattgcagacagatactaaaatatcagacataata
acccgggagacattagaagaaagtttcatagaagaatcaagagtaagagatggggataag
gttataattggaggaatattatcacaggtatctagaaagattaccaagaataatgacatg
atggcttttgccagattagaagatttatatgggatcatggaaataataatattctctaaa
aattttcagagatttaaaagtctaatttatgatgattccatggttttagtaaagggcaga
ataagcattagagaagaggaacagcctaaattgatttgtgaaattatagaacctcttatg
agaatagatacggaaaaactttatatattaattaaagaacagcaggatataagaaataca
ttgaaagaagtgaaacctttacttataaattttagtggaagtgttccggtgtatttatgt
acgcaaaaggagagaaaaaaattcagattggatagagatctgtgggtaaaatccgatcca
gatcttatgggtatattgaaaaaaagatttggagatagcaatgtaaaaattatataa
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