Caldicellulosiruptor kronotskyensis: Calkro_0491
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Entry
Calkro_0491 CDS
T01357
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn02020
Two-component system
ckn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Calkro_0491
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Calkro_0491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckn03021
]
Calkro_0491
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ckn02035
]
Calkro_0491
Transcription machinery [BR:
ckn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calkro_0491
Bacterial motility proteins [BR:
ckn02035
]
Flagellar system
Flagellar assembly proteins
Stator
Calkro_0491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_3
HTH_24
UPF0122
HTH_17
HTH_38
HTH_29
HTH_28
HTH_10
Rv2175c_wHTH
PCI
HTH_AsnC-type
Phage_terminase
PhyR_sigma-like
DUF134
GerE
Sigma70_ECF
HTH_Tnp_ISL3
Cytidylate_kin2
HTH_50
DUF1798
MarR_2
HTH_6
KLRAQ
MarR
KORA
TnsD
HTH_5
DUF7578
CT_C_D
Motif
Other DBs
NCBI-ProteinID:
ADQ45391
UniProt:
E4SEA4
LinkDB
All DBs
Position
610372..611112
Genome browser
AA seq
246 aa
AA seq
DB search
MDDALLWEKFTKTKDPKIKEQLIIKYMPLVKLVAGRMAIYFGGNVEYDDLVSYGSIGLLD
AIEKFDSQKGVKFETYAYTRIKGAIIDCVRNQDFLPRSIRQKAKEIERAYIEIEKEGKTP
TNQEVAKRIGISVEELQKLQDRISSGMIISLESFLEQNYESKIGGLEDFVSQPEHFIENE
ELRKVLRQQIDNLMENERMVIVLYYYEDLSIKEIAKVLGVSESRVSQLHTRALLKLRSAL
QKYLEK
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcacttttgtgggaaaagtttacaaagacaaaagaccctaaaataaaagaa
caacttataataaaatacatgccacttgtaaagcttgtggctggcaggatggccatttat
tttggtggtaatgttgagtatgatgacttggtaagttatggttcaattggtcttcttgat
gcaatcgaaaagtttgatagtcaaaaaggagtcaaatttgagacgtatgcatatacaaga
ataaaaggagcaataattgactgtgttagaaaccaggattttttgccacgaagcattcga
cagaaagcaaaagagatagaaagggcttacattgagatagaaaaagaaggtaaaaccccg
acaaatcaagaagttgctaagagaattggaatttctgtagaggaacttcagaaactgcaa
gacaggatatccagtgggatgattatttcactggaaagttttttagaacagaattatgaa
agcaaaattggcgggcttgaagattttgtgtcccagccagaacattttatagagaatgaa
gagcttagaaaagtgttgaggcagcagatagataatcttatggagaatgaaaggatggta
atagtgctttattactatgaagatcttagcataaaagagatagcaaaagttctgggcgta
tctgaatcacgtgtaagtcagcttcacacgcgagcgcttttaaaactcagaagtgcatta
caaaagtatttggaaaaataa
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