Caldicellulosiruptor kronotskyensis: Calkro_0996
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Entry
Calkro_0996 CDS
T01357
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calkro_0996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckn03021
]
Calkro_0996
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_0996
Enzymes [BR:
ckn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calkro_0996
Transcription machinery [BR:
ckn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calkro_0996
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calkro_0996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RAD51D_N
TfoX_C
PTS_IIB
Motif
Other DBs
NCBI-ProteinID:
ADQ45867
UniProt:
E4SB85
LinkDB
All DBs
Position
1158625..1159599
Genome browser
AA seq
324 aa
AA seq
DB search
MIEFQKPTIRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDG
VLHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKVMYIEAQGECEVKAKDIKADADIEI
CNPDHHIATLNSDARLFMEITVSQGKGYVPAERNKQPNQPIGVIPVDSIYTPVVKVNYKV
ENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFNLFTDLSNIPTKIETVVKQ
EPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSLEEVI
QKLHSLGLSLKKSDSTPKEEEEEK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
ttgatagaatttcaaaaaccaacaataaggtgtgaagagctgagcccagacaataaatac
gggcgatatgttattgagcccctggaaagaggttatggtataacagttggcaatgcactc
aggagaacacttttgtcgtcgctacctggtgcagcagttacagcagttaagattgatggg
gttttacatgagttttcaacaattccaggggtcttagaagatgtaccagaaataattctc
aatttgaaaggtttggctataaagatgtcatccccagggccaaaggtaatgtacattgag
gctcagggtgagtgtgaagtaaaagcaaaagatataaaggcagatgctgatatagagatt
tgcaatccagaccatcatattgctactcttaactctgatgcaagactttttatggagata
acagtaagtcaagggaaaggttatgttccagctgaaagaaacaaacagccaaaccaaccg
ataggtgttatccctgttgattcaatttatacgcctgttgtaaaagtcaactacaaggtt
gaaaatacaagagttggtcaggtaaccgactatgataagttgactatggagatatggaca
aacggaactattcgtccagatgaggcgctaaccgttgccgcaaagattttaatagagcat
tttaatctgtttactgatctttctaatattcctacaaagattgagacagttgtaaaacaa
gagccgccgaagagaaataaacttttagatatgaccatagaagagcttgagctttcagta
aggtcatacaactgtcttaaaagagcggggataaacacagttgaggaccttgtcaacaag
actgaagaagagatgatgaaggtaaggaacttgggcaaaaaatccttagaagaggttatc
caaaaacttcacagtttgggacttagcctcaaaaagagtgatagcacgccgaaggaggag
gaagaagagaaatga
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