Caldicellulosiruptor kronotskyensis: Calkro_1119
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Entry
Calkro_1119 CDS
T01357
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calkro_1119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckn03019
]
Calkro_1119
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1119
Enzymes [BR:
ckn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calkro_1119
Messenger RNA biogenesis [BR:
ckn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Calkro_1119
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Calkro_1119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Chlorophyllase
Motif
Other DBs
NCBI-ProteinID:
ADQ45985
UniProt:
E4SCW9
LinkDB
All DBs
Position
1274936..1278220
Genome browser
AA seq
1094 aa
AA seq
DB search
MYPSLLDEFFQKNSQRFKDSIIFFKGFPTWVYKHLFQKNFSNLSGEYFLNSKGYIDVKKF
FGYDKRKYTKEILGKSESIQILWGFYEELIYISTFLSLSLFGRKPLIVNNNLFNIYYPVD
IELSDEEYSYLKQIQEKEESQPILHQSPLDIYYQFYADIKKNKDVTFVSYINKHIDEGFE
EINFFDEIDFDYSIGIADKNTISVNDIQYQLVVNKIQNGEIFDEIKIQLEEEHNKKQISS
FVSLCRKINQSVTIIKGNKFYNKEETANKYLYILKKYWGEESEFRELKFYKDPDKSLELE
TISQGHIISEIISQCEKAYNNDDSYNDIFITAPTGSGKSLLFQIPAIYLAEKKNAVTIIV
SPLISLMRDQVESLKDNGVNFAETINSQVTYSEKEIIIQKLKDGEISIIYLSPEFLLSSP
IETLIGNRKLGLFVIDEAHLVTTWGRDFRVDYWYLGDYIKKLRELLNMKFPVVCLTATAV
YQGPDDMVLETVENLNLRKCKYYLGPAKRENIEFEIKYHKDLVGSHDRFKIERAKERIEE
FLERKEKSVIYCPYTTHVESIYNELDAKYKHFVGKYYGDLDKLTKNDNQVEFKEGVKKIM
ICTKAFGMGVDVKDIVNIYHYAPTGNLADYVQEIGRAARNPKLVKGKAIIDFTPKDLRYI
RTLYGLSAIRQYQLKEMMRKLCEIYDEKKVRNILVSPEAFSYIFSNESDLENKVKSGLML
ISKDLYQKYQYPVLFVRPRGLFSHNYIHVPYSIVSDFEVIFGKYLTEIKIDNTRVIPSND
KLNGDTKIIDSGKVFEINLAKLWEEKYSNKTFAEFKREFFEGTLFEFSDKIAPRVRFRVV
YKYDFDDIIKQMEYVMEKLVCIFDELKTGRGDKLFTSSDFLELFKKYLSDFNVNTYIANL
ILQLFLVNEEDKLDAFTYNATDFKFIQHEVDAKSGEKRYRVCSYKYRNIKSHCIRLLLGM
KPDRSISSKIYEKYLPVSKGEWSKDNKDVSEFIKIASLLEIFKLASYEVFGGRNIELFIR
INDPQKLKYLANNPRYTNSILSDIERRRKKSEQILTEFFSKQIDNKTRWDIIELYFLGKM
DEVENLLSQYKSEI
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgtatccgtctttgttagatgagttttttcagaaaaacagccagagatttaaagattct
attattttcttcaaaggttttccaacatgggtttataaacatttgtttcaaaagaatttt
tcaaatttatcaggagaatactttttgaactcgaaaggttacatagatgtaaaaaaattt
tttggctatgacaagagaaagtacacaaaggaaattttaggtaaaagtgaaagtatacaa
attttatggggtttttacgaggaactcatttatatttctacatttttgagcctttctcta
tttggcagaaaaccgcttattgttaataataatctttttaatatctattatccagtagat
attgaattgagtgatgaagaatatagttatttgaagcaaatacaagagaaagaagaaagt
caacctattttgcatcaaagtcctttagatatttattaccaattctatgcggacataaaa
aagaataaagatgtaacatttgtttcatatattaataaacatatagatgaaggatttgaa
gaaataaatttttttgatgagatagattttgattattctataggaattgcagacaagaat
actataagtgttaatgatattcaatatcaattagtagttaataaaattcaaaatggtgaa
atatttgacgagattaaaatacagttagaagaagaacataataaaaaacagatttcatct
tttgtaagtctttgtagaaagataaatcaatccgtaactataattaaagggaataaattt
tataacaaagaagagactgcaaataaatatctttatattctaaaaaaatattggggagaa
gaaagtgaatttcgagaattaaaattttataaagatcctgataaaagccttgaacttgaa
acaataagtcaagggcatataatttcggaaataataagccaatgcgaaaaagcttataat
aatgatgattcgtataatgatatttttattacagctccaactggttcaggtaaatcattg
ttgttccaaatcccagctatttatttagcagaaaaaaagaatgcagtcacgattattgtg
tctccacttatttcattaatgagagaccaagttgaaagtttgaaagataatggtgttaat
tttgcagaaacaataaattctcaagtaacttatagtgaaaaagaaattattattcaaaag
ttaaaagatggtgaaatctcaataatatatctttccccagaatttttactttcttcacca
attgaaacgttaataggaaatagaaaacttggtttgtttgtgattgatgaggctcattta
gttactacatggggcagagattttagagtggattattggtatttaggagactatattaaa
aaacttagagaattacttaatatgaaatttcctgtagtgtgcttaacagctactgctgta
tatcaaggaccagatgacatggtcttagagaccgttgaaaatctcaatttgagaaagtgt
aaatattatttaggacctgctaagagggagaatattgagtttgagataaaatatcataag
gatttagttggatcacatgataggtttaaaatagaaagggctaaagagagaatagaggaa
tttttagaacgtaaagagaaatcagtgatatattgtccttatactacacatgttgagagc
atttataatgaacttgatgctaaatataaacattttgttggaaaatattatggagactta
gacaagcttacaaagaatgataatcaagtggaattcaaagaaggcgtaaaaaagattatg
atttgcacaaaagcttttggtatgggtgtcgatgtaaaggacatagtgaatatatatcac
tatgctccaacaggcaatttagctgattatgtgcaagaaattggtagagcagcaagaaat
ccaaaattagttaaaggaaaagcaataattgatttcactcccaaggatcttcgctatata
aggacattatatggtttatctgctataagacaatatcaattgaaagagatgatgagaaaa
ctctgtgaaatttatgatgaaaagaaggttagaaatatacttgtttcacctgaggcattt
tcgtatattttttcaaatgaaagtgacttagaaaataaagttaaaagtggactaatgctt
atatcaaaggatttatatcaaaaatatcaatatccagtattgtttgtaagaccacgtgga
ttattctcacataattatattcatgtcccatattcaattgtaagtgattttgaagtcata
ttcggcaaatatttaactgaaataaaaattgataatacaagagtgattccttctaatgat
aaattaaatggagacaccaaaattatagattcagggaaagtctttgaaataaatttagct
aagttgtgggaagaaaaatattctaataagacatttgctgagttcaaacgagaatttttt
gaagggacgttattcgagttcagtgataaaatagcaccaagagttaggtttagagtcgta
tataaatatgattttgatgatatcataaagcaaatggaatatgtaatggaaaaattagtt
tgtatatttgatgaactgaaaacagggcgtggggataaattatttacgtcaagtgatttt
ttagaactatttaaaaagtatttgagtgatttcaatgttaacacatatattgctaatctg
attctacaattatttttagtaaatgaagaagataaattagatgcttttacttataatgca
actgattttaagtttattcagcatgaggtagatgcaaaaagcggagagaaaagatatagg
gtatgtagttataaatatcgtaacataaaaagtcattgtataagattacttctcggaatg
aaacctgatagatctataagttcaaaaatttatgaaaagtatttaccagtctcaaaaggt
gaatggtcaaaagataacaaagatgtgtcggagtttattaaaattgcatccctattagaa
atattcaagcttgcgagctatgaagtttttggtggcaggaatattgaactcttcataaga
ataaatgatcctcagaaactgaaatatttagctaataatccaaggtatactaatagcatt
ttgagtgatatcgaaagaagaagaaagaaatctgagcaaatattgactgaattcttttct
aagcaaatagataataagacaaggtgggatattatagagttatactttttaggaaagatg
gatgaagtagaaaatcttttaagtcaatataagtctgaaatttag
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