Caldicellulosiruptor kronotskyensis: Calkro_1416
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Entry
Calkro_1416 CDS
T01357
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03420
Nucleotide excision repair
ckn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calkro_1416
03430 Mismatch repair
Calkro_1416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1416
Enzymes [BR:
ckn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calkro_1416
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calkro_1416
MMR (mismatch excision repair)
Other MMR factors
Calkro_1416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_14
CarD_TRCF_RID
DEAD
LPD3
Motif
Other DBs
NCBI-ProteinID:
ADQ46272
UniProt:
E4SC37
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Position
complement(1586763..1588907)
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AA seq
714 aa
AA seq
DB search
MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFT
NKAADEMKERIKRLVSTQSFSEMWVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQL
LKECFDKLNIDPEKLDIRYVSRHISNLKNQLIGPSDVYRYGEVDGRVVEVYKLYNKLLKE
YNAFDFDDLLYYTVVLFETNPDILEKYQNKFKYILVDEYQDTNHAQFYFVYLLSQKHRNI
CVVGDDDQSIYSFRGANIKNILEFEKVFSDAKVIKLEKNYRSTKTILSAANEVIKNNNYR
KFKKLWTDNIDGEKIFLYSAFDEVNEAEFVASSVKNLIESGISPSEIGVLYRTNAQSVNF
ENALSAYSVPYKVVGALRFYERKEIKDIIAYLRLITNPHDDLSLFRIINVPRRGIGNSTI
EKVKVLSEEYNVSAYTILLERAKFNFDKKTYERLNGFISLIEDLKAEAENLSVSAAIKLV
LEKTGYLESLLSSKSEEEFQRAKNIEQLISTAAIFEEENEEPTLQNFLNSITLSSEDEDT
QKEEKVSLMTVHAAKGLEFEVVFLTGLEEGLFPLVRAEEPIDAEKELEEERRLCYVAITR
AKKLLVLTYANNRRVFGRFSSRQRSCFIEEIPQRYIQVVYSPITKTHQTFSVKIDQSEDF
SVSNLQVGNKVQHGKFGVGKVIWLSDDMREVVVDFEKIGQKRLLLSYANLKRIG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggaatggctaaaagaattaaatgagcagcaaaaagaggcggttctttcaacagaaggg
ccgcttttagtattggctggtgcaggttcagggaaaactcgtgtcataacatatagaata
gcatatatattgaatatgggattagcagatcctggcaatattcttgcaattacgtttaca
aacaaagctgctgatgagatgaaagaaagaataaaaaggcttgttagcacccaatcattt
tcagagatgtgggtgtctacttttcatgctgcgtgtgcaaggattttgagaatggaagct
cataatataggattttcaaacaactttgtaatatttgatacacaggatagaaaccagctt
ttgaaagagtgttttgacaaattaaacattgaccccgaaaaacttgatattagatatgta
tcaaggcatattagcaatctcaaaaatcagttaattggaccttctgatgtatacagatac
ggtgaggtcgatggtcgtgttgttgaagtgtataaactttacaataaacttttaaaagaa
tacaatgcgtttgactttgatgaccttctgtattacactgtagttctttttgaaacaaac
cctgacattctggaaaagtatcagaataagtttaaatacatcttggtagatgagtatcag
gacacaaatcatgctcagttttactttgtttatttactttcacaaaaacacagaaatatc
tgtgttgttggtgatgacgaccagagtatatacagtttcagaggagcaaatataaaaaat
attttggaatttgaaaaggtttttagcgatgccaaggtaataaaattagaaaaaaactat
aggtctacaaagacaatactatcagctgcaaatgaggttataaaaaacaataattacaga
aaatttaaaaaattgtggacagataacattgatggcgaaaagatttttctgtactcagct
tttgacgaagtaaatgaagcggagtttgttgcatcgagtgtgaaaaatcttattgaaagc
gggatttcaccctcagaaataggagtgctctaccgaacaaatgctcaatctgtaaacttt
gagaatgcactttcagcttattctgtaccctataaagttgtaggtgctttgcgattttat
gaaagaaaagaaataaaagatataattgcttatttgagactcattacaaatccgcatgac
gatttgagcctatttaggattatcaatgtacccagaaggggtataggaaacagtaccata
gagaaagtaaaagttttaagtgaagagtataatgtttctgcatataccattttacttgag
cgagcaaagtttaattttgacaaaaagacatatgaaaggctgaatggctttatatctctg
atagaagatttgaaagctgaggcagaaaatttatctgtatctgcagctattaaacttgtg
cttgaaaagacagggtatttagaaagtttgctcagtagcaaaagtgaagaggagtttcaa
agagctaaaaatattgaacagcttataagcactgcagctatttttgaagaagaaaatgaa
gagccaaccttgcaaaattttttgaactctattactttgagttctgaagatgaagatact
caaaaagaagagaaagtttcacttatgacagttcatgctgcaaaaggattggaatttgaa
gttgtctttctcacagggcttgaagaaggattgtttccgcttgttagggcagaagaaccc
attgatgctgaaaaggaacttgaagaagaaagaagactgtgttatgttgcaattaccaga
gcaaaaaagcttcttgttctgacatatgctaacaatcgaagagtatttggcaggttttct
tcacgacaaaggtcttgttttattgaggagattcctcaaagatacattcaagttgtctat
agtcctattactaaaactcaccaaacattttctgtcaagattgatcaatctgaagatttt
tctgttagcaatttacaggttggaaacaaggtacagcatggaaagtttggagttggaaaa
gttatctggctttcagatgatatgagagaggtagtagtagattttgaaaagataggtcag
aaaagactacttctgtcatatgcaaatctcaagaggattggttga
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