Caldicellulosiruptor kronotskyensis: Calkro_1658
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Entry
Calkro_1658 CDS
T01357
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calkro_1658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckn03021
]
Calkro_1658
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1658
Enzymes [BR:
ckn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calkro_1658
Transcription machinery [BR:
ckn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calkro_1658
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calkro_1658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF4162
Motif
Other DBs
NCBI-ProteinID:
ADQ46510
UniProt:
E4SFI5
LinkDB
All DBs
Position
complement(1826288..1826521)
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AA seq
77 aa
AA seq
DB search
MLLRPGLDELLKFVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASG
KISYKYVKPVKKYEIKK
NT seq
234 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgcgaccagggcttgacgaacttttaaaatttgtagacaataaatacacactt
tctgtacttgttgcaaaaagagcaagacaacttcttcagcaggcacaaaaaaaagttgac
attaccaattttaactctgacaagtatgttacaatggcggtaaatgaagttgcttctggg
aagatttcttacaagtacgtaaagccggtgaaaaagtatgagattaaaaaataa
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