Caldicellulosiruptor kronotskyensis: Calkro_1848
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Entry
Calkro_1848 CDS
T01357
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calkro_1848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckn03021
]
Calkro_1848
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1848
Enzymes [BR:
ckn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calkro_1848
Transcription machinery [BR:
ckn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calkro_1848
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calkro_1848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ADQ46694
UniProt:
E4SG19
LinkDB
All DBs
Position
complement(2009918..2013409)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDIT
PRNLEKVLYFAAYVVIDPGDVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLSQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKEGDKGEGMIFSSEEEALLAYEHKVVGLHARIKVK
RTAEVDGEVISGLVETTVGKIILNQVIPQDLGFVDRSKRENLLKYEIDTLVDKKMLGKII
DRCIKVYGNTRTAEILDEIKELGFKFSTRGAITISVSDMVIPEVKQKLIAEAEQKVENIE
KLYRHGLISDQERYEQVISIWNETKDKLTEELIQNLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTEKGIWVEEIRDGTEVIETLEERIIGRYAADDIKNEKTGEVIVKK
NELITEEAAKKIVDAGINRVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNDNGEERTYEIPYGARLKVNDGDYIQAGDELTEGSINPHDLLKIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDPGDTELLPGDIVEIHRFEEENDKA
IAEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggatttgttcaatttcgatgctattaaaattagtcttgcttctcctgaaaagataaga
gaatggtcgcgcggtgaagtaaaaaaacccgagactataaactataggacactcaagcct
gaaaaggatgggcttttctgtgaaaagatatttggtccaacgaaggactgggaatgccac
tgcggaaagtataaaaaggtcaaatataaaggtgttgtttgtgacaagtgcggtgttgaa
gtgacaaaagcgaaggtaagacgtgagagaatggggcacattgaacttgctgcccctgtc
tctcacatctggtatttcaaaggtgttccaagcagaatgggacttattttggacattaca
ccccgaaatttagaaaaagtgttatattttgctgcatatgttgtaattgacccgggcgat
gtgccaaatttagaaaagaaacagattctttctgaaaaagaatacagggaactaaaagag
aagtatggtgacaggttcaaggcagggatgggagcagaggcaatcaaagagcttttgaag
gaaattgaccttgacaagctatcgcaggagctgaggcaagaacttgagactgcaacagga
cagaaaaaactaaagattatcaaaagacttgaggttgttgaagcttttagaaagtctggt
aaccgtcctgaatggatgatacttgatgttataccagtcattccacctgaactcagacca
atggtccagcttgacggtggaaggtttgcaacgtcagatctgaatgatctttacagaaga
gtaataaacagaaacaataggcttaaaaaactaatggatttaggtgcaccggatataatt
atcagaaatgaaaagagaatgcttcaagaagctgttgatgctcttatagacaatggaagg
cgtggaagaccggtaacaggtcctggcaacagaccgctcaagtcactttccgatatgctc
aaaggaaagcagggaaggttcagacagaatcttttgggaaagagagttgactattcaggg
cgttctgttatagttgttgggcctgagcttaagatttaccagtgtgggcttccaaaagag
atggctttagagcttttcaaaccttttgtcatgaaaaagctggttgagaaaggaatctgc
aacaacataaaaaatgcaaagaaagccgttgaaagacagagaagtgaagtctgggatatt
ttagaagaggtaataaaagatcatccagtcctgctaaacagagcacccactttacacagg
cttggtattcaggcttttgagccagtgcttgttgaaggaagggctataagacttcaccca
ctggtttgtacagcgtacaatgctgactttgacggtgaccaaatggcggtgcacgttcca
ctttctgccgaggctcaggctgaagcaaggtttttgatgctttctgcaaataacctatta
aaaccagcagatggcaaaccaattgtggttccaacccaggatatggttttgggaatttac
tacctcactcttgaaaaggaaggtgacaagggtgaggggatgatattctcatcagaagaa
gaagcgcttttggcatatgagcacaaggttgttggacttcacgcaaggataaaagttaag
agaacagcagaagtagatggggaagttatctctggacttgttgagacaactgtggggaag
attatactaaatcaggtaattcctcaggatcttggttttgttgatagaagcaagagagaa
aatcttttgaagtatgaaattgacacacttgttgacaaaaagatgcttgggaaaattatt
gacaggtgtataaaggtttatggaaatacccgaacggcagagatacttgacgagataaaa
gaacttggatttaaattttcaacaagaggagcaattaccatttcagtttcagacatggtt
attccagaagtcaaacaaaagctcatagcagaggctgaacaaaaggttgagaacattgaa
aaactatacagacatggtttgatttctgaccaagaaaggtatgaacaagtaatttctata
tggaacgaaacaaaagacaagctcacagaagaacttatccagaatcttgatgaattcaat
ccaatatttatgatggctaactctggtgcaagaggttctaaaaaccagatatcacagctt
gctggtatgaggggactaatggcaaacccatctggaaaaacaattgagatgcctataaag
tcaaactttagagaggggcttaatgttatagagtttttcatttcaacacatggtgcacga
aaagggcttgctgacacagcgctcagaactgcagactcaggatatctgacaagaagactt
gtagatgttgcacaggacataattgtaagggaagaggattgtggaacagaaaaaggcata
tgggttgaagagataagagatggcacagaggtaattgaaacacttgaagagaggattata
ggaagatatgcagctgatgatataaaaaatgaaaaaacaggtgaggtaatagtaaagaaa
aatgagctaattacagaagaggcagcaaaaaagatagtagatgcggggatcaacagggta
tatgtaaggtcagttttagagtgcaaaacaagatacggagtttgtacaaaatgttatgga
cttgaccttggtacaggccagccggtgaatgttggagaagcagttggtatcattgctgca
caggctataggtgagccgggtactcagcttacaatgagaacattccacacaggtggtatt
gctggacaagacattacgcaaggtcttccaagggttgaggagttgttcgaggcaagaaaa
ccaaagggtgttgctgtgatttctgaaatagaagggtatgtttcaataaaagaagacaaa
aagaggacaataacagttcgaaatgacaatggtgaagagagaacgtatgaaataccgtac
ggtgcaagattaaaagtaaacgatggtgattatattcaagcaggggatgagttgacagaa
ggttcaataaatccacatgaccttttgaaaataaaaggaccaagaggtgttcagagctat
cttttagctgaggtacagaaagtttacaagatgcagggcgttgacataaacgacaagcac
atagagataataatcagacagatgatgaagaaagtcaagattgaagacccaggcgatact
gaactgttgccaggcgacattgtagaaatacacagatttgaagaggaaaacgacaaggca
atagcagaaggaaagcgtcctgcacttggaagaagggtactacttggcataacaaaagca
gcactctctactgagtcgttcttgtctgctgcatcattccaggaaacaacaagagtattg
acagatgcagcaataaaagggaaagttgatcctctaattggtcttaaggaaaatgtcatc
attggtaagttaattcctgcaggaactggaatggcaaagtacagaaatattgttattgaa
gaaaatcagtag
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