Caldicellulosiruptor kronotskyensis: Calkro_1917
Help
Entry
Calkro_1917 CDS
T01357
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Calkro_1917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckn03021
]
Calkro_1917
Transcription machinery [BR:
ckn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calkro_1917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF4423
Motif
Other DBs
NCBI-ProteinID:
ADQ46761
UniProt:
E4SG86
LinkDB
All DBs
Position
complement(2090343..2091596)
Genome browser
AA seq
417 aa
AA seq
DB search
MSEQNMENNEVKNLNDKNINKNSENEHQQEAEKQLLASQKNESQEKQSTKKSTESKSDGK
KISEEKKTLIREKVRELISLGQSKGFLTYSEIQEILDKVELDASQVENIYDTLESMGIDV
VDDRVSEEELLKDDIENLPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIEQGDEEA
KKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWI
RQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVR
EILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNERE
KKVLKLRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagaacatggaaaacaatgaggtaaaaaacctcaatgacaaaaatataaat
aaaaatagtgaaaacgaacaccagcaagaagctgaaaaacaattgcttgcatcacagaaa
aatgaaagtcaagaaaagcagtctacaaaaaagagcacagaaagtaaatcagatggtaaa
aaaataagtgaagaaaagaagacacttataagagagaaggtcagagaacttatctcactt
ggtcagagcaagggttttttgacatattcagagatacaggagattcttgacaaggtagag
cttgatgcaagccaagttgaaaatatatatgataccttagagagcatgggaattgacgtt
gttgacgacagagtgtcagaggaggagctcttaaaagacgatatagaaaatctgcctgaa
ggtattgcaattgatgatcctgttaggatgtatcttaaggaaattggtaaaatacctctt
ttgactcctgaagaagaaatcgaacttgcaaagaggattgaacagggggatgaagaggct
aaaaagaggcttgctgaggcaaacttgaggcttgttgttagcattgcaaaaaggtatgta
gggcgtggaatgttattcttggatctaattcaagaaggtaatttgggacttttaaaagca
gttgagaaatttgactacagaaaaggctataaattctcgacatatgcaacctggtggatt
cgccaagcaattacaagggcaattgccgaccaagcaagaactataagaattcctgttcat
atggttgagacaataaacaagttagttagagtatcacgccagcttctgcaagaaaaaggt
agagagccaacacctgaagagatagcaaaagagatgaacatgccagttgaaaaggtgcgt
gagattttgaagattgcccaggagcctgtatcgttggagacgccaatcggtgaggaagaa
gacagccacttgggtgactttatccctgatgatgatgctcttgcaccctctgaagcagcg
gcatattcaatgttaaaagagcagcttttagaggttttggattcattaaacgaaagagaa
aagaaggttttaaagctccgatttggccttgaagatggcagagcaagaaccttagaagag
gttggcagggaattcaatgtgacacgtgaaagaattcgtcaaattgaggcaaaggcactg
aggaaacttagacatccgagcaggagtaagaagcttaaggattttttggagtaa
DBGET
integrated database retrieval system
