Caldicellulosiruptor kronotskyensis: Calkro_1978
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Entry
Calkro_1978 CDS
T01357
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ckn
Caldicellulosiruptor kronotskyensis
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckn03032
]
Calkro_1978
03036 Chromosome and associated proteins [BR:
ckn03036
]
Calkro_1978
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1978
DNA replication proteins [BR:
ckn03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Calkro_1978
Chromosome and associated proteins [BR:
ckn03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Calkro_1978
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Calkro_1978
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-DNA_bdg
DUF2267
NNH1
DUF4836
Lmo2446-like_N
Motif
Other DBs
NCBI-ProteinID:
ADQ46822
UniProt:
E4SGE7
LinkDB
All DBs
Position
complement(2156743..2157018)
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AA seq
91 aa
AA seq
DB search
MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG
RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaacagatttgatttcggcaatggcggagaagagcggtcttacaaagaaggat
gctgaaaaggcactaaatgcgtttgtagatgcagtaacagaggcactctctaagggggaa
aaggttcagctcgttggttttggttcatttgaggtaagagaaagggcagaaagagttggt
agaaatcctcaaactcaagaagagataaagattccagcaacaaaagtacctgtgttcaaa
gcaggtaagatgttgaaagatgctgttgcaaagtaa
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