Caldicellulosiruptor kronotskyensis: Calkro_1988
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Entry
Calkro_1988 CDS
T01357
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calkro_1988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1988
Enzymes [BR:
ckn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calkro_1988
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Calkro_1988
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADQ46832
UniProt:
E4SGF7
LinkDB
All DBs
Position
complement(2167120..2170545)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLEKLESFKRLEEDVVKKSLPLVVTGLGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFKNIFSCVVSLQERENPYIASFAKSRDSEISRIEQLVKIFEDGFDVLILSSQNLF
EKYTDLKFDYIHLTEGHDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVASK
YPVRIEFFGDTIDTIRLFDVETQKSFERINSMKIYKAIEWDLEEDFSEGLKRVKEDYKKM
KLKLKEDGRKNLEESFREVVEELQLNVERLYPYYYQQFFSVVDIFGECLIFVDEYNQVYS
SLKAFEQEIQEMFSDLLEKGFVLPKMAECYFTTSEVLEKLSRSIILQTFVSAIKELELKD
IISFNFLRELPSYNGQKEVLIDDLKYYMSKRYTINIFTGSRTSLEDLADALLKEDIQFSE
AEEPEVERTGVYLIARSIEKGIEVQDLKLVYLSFFHLEKKKENETKKRVKSKKDAFYTIE
DLKPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLELVAKDLVELYAKRQLGKGFKFSKDTLWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRFPVQTFVLEYNERIIKEAILKEISRGGQVFYLYNRVKDIQEVAAKLQKLVGD
SVKIACAHGKMSEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRG
AGSLLGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSSYIDD
EKERINMYKKISSIESKDDINDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISIL
QFQESLFKLQFLNKEMLEAAKVKFLRKGLSYLQNRDDMLQLLIANNWFDTLIAILEDLQG
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaaacttgaaagtttcaaaaggcttgaagaagatgtagtaaaa
aagagccttcctcttgttgttacaggccttggcgagatggggaaggcgcttgtggtcaag
tctctatgtgaaaagtttaacaaaaaggcgttgtttatcacaactcaaagagcaaagctt
gagtgggaaagaaggtttaaaaacatttttagttgtgttgtgagcctgcaggaaagagaa
aatccatatattgcatcttttgcaaagagcagggattctgaaattagtagaatagagcag
ttagtaaagatttttgaggacggttttgatgttctcatattaagtagccagaaccttttt
gaaaagtacacagatttaaagtttgattatatccatctcacagaaggtcatgacattcag
cttgaaatccttatagaaaagcttttaaaattcggatatgaaagagtgaaaactgtcgaa
aaaaaaggacagttttcgcaaaagggtggcatagttgatatatatcctgtagcaagtaaa
taccctgtgaggattgagttttttggagatacgatagacacaattagactttttgatgtt
gaaactcagaagtcttttgaaagaataaatagtatgaagatttacaaggcaattgagtgg
gatttggaagaggacttttcagaaggtttaaaacgcgttaaggaagactacaaaaaaatg
aaattgaaattgaaggaagatggcagaaaaaatttagaggagagtttcagagaggttgta
gaagaacttcaactaaatgttgaaagattgtatccctattactaccaacaatttttctca
gttgtcgatatttttggtgaatgtcttatctttgttgacgagtacaaccaagtttatagc
agcttgaaagctttcgaacaagagatacaagagatgttttcagaccttttagaaaaagga
tttgtgcttccaaaaatggcagagtgttattttaccacaagcgaagttttagaaaagctt
tcgaggtcgataattcttcaaacatttgtctcagctataaaggagcttgaactcaaagat
atcatttctttcaattttttaagggagcttccttcttataatgggcagaaggaagtttta
atagacgatttgaagtattacatgtccaaaagatataccataaacatctttacaggaagt
cgaacatcacttgaggacttggctgatgcacttttaaaagaagatatacagttttctgag
gctgaagaaccagaagtagaaagaacgggagtgtatttaatagcccggtctattgaaaaa
ggcattgaggtgcaagatctcaaattggtttatctttcgtttttccaccttgaaaagaag
aaggaaaatgagacaaaaaagagggtaaaatctaaaaaggatgccttttatactattgaa
gatttaaaacctggagattttgttgttcacaggacatatggtattggcaaattcttaggg
tttgaaaagattactgtcgaaggcacaacaaaagagtatgtaaagcttgaatatgctaac
tcttcttatttatatgtcccaacaactaacttagatgtgattgaaaagtatattggaaca
gatgatgtacagccaaaactatctaagcttgggtcacaagagtggcaaaagcaaaaacag
aaggtaagaaaatctcttgagcttgtggcaaaagacttggttgagctttatgcaaaaagg
cagcttgggaagggtttcaaattttcaaaagataccctctggcagaaagagtttgaggag
aagtttccatatacagagacagaaggtcagcttcaggcaatagaagaaataaaaagagat
atggaaagcgaaaagccgatggacaggatactttgcggcgatgttggatatggcaagacc
gaggttgcaatgagagcggcgttcaaagctgtgatggattcaaaacaggtggcagtactt
gttcctacaaccattcttgcgcaacagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaagttctctcgcgtttaaaaaatgagacacaacaaaagaagata
ataaaaggattaaaagaaggtacaattgacattgtgattggtacgcacaggctactttca
agcgatgttaagttcaaagaccttggtcttttgattattgatgaagagcacaagtttggc
gtagaagcaaaagagaagattaaaaagctaaaaacaaatgttgatgttttgaccctcacc
gcaacacctataccaaggacacttaacatggcacttttgggaattagggatttgagtgtg
attgaagacccgccggaagacaggtttcctgtgcagacatttgtgcttgagtacaatgaa
aggataataaaggaggctattttgaaagaaatttcaagaggaggtcaggtattttatctt
tacaacagggtaaaagacatacaagaagtggcagctaaactacaaaaacttgtaggagac
agtgtgaaaattgcatgtgctcatgggaagatgtctgaagaggagcttgaagaggtattg
attgattttattgaaggcaggtacgatgtgcttgtgtgtacaacaattatagagtcaggt
gttgatatgccaaacgtcaatacacttattgtggaagacagtgatagacttggtcttgct
cagctttatcagctaagagggagggtaggtcgttcttcaaggcttgcgtatgcgtatttt
acgtttagaaaagacaaagtgctgtctgaacaggcacaaaagagacttgctgcaataaaa
gagtttacagaacttggggctggttttaaaattgccatgagggaccttgagataagaggt
gctgggtctttgcttggaaaacttcagcatgggcatataaacagtgttgggtatgatatg
tatataagacttctttcagaagagataaggcgtcttaaaggtgaaaatatacagccagag
attgaacctcaaatagatgtaaaagtaagtgcatttattagtagcagttacattgatgat
gaaaaagagagaattaatatgtacaaaaagatttcatcaattgagtcaaaagatgatata
aacgatatttatgatgaactaatagacagatttggagatgtgccaaaggaggttgataat
ctaataaaggttgcatacttgaaatgtttgtgtaaaaaggcagggataataagtattttg
cagtttcaagaaagtctttttaaacttcagtttttgaacaaagaaatgcttgaagctgca
aaggtgaagtttttaaggaaaggactttcatatttacaaaacagggatgatatgttacag
ctcttgattgcaaataactggtttgataccttaatagctattttagaagatttacaagga
aattaa
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