Citrobacter koseri: CKO_00161
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Entry
CKO_00161 CDS
T00592
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cko
Citrobacter koseri
Pathway
cko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKO_00161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cko03019
]
CKO_00161
03400 DNA repair and recombination proteins [BR:
cko03400
]
CKO_00161
Enzymes [BR:
cko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKO_00161
Messenger RNA biogenesis [BR:
cko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKO_00161
DNA repair and recombination proteins [BR:
cko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKO_00161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABV11330
UniProt:
A8ACW7
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All DBs
Position
154154..155983
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLELGAKQVLQETFGYQQFRPGQEEIIETVVSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQHEVMAGCRTGQVRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPSLPFMAL
TATADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRDLAHDKLPVYGIGRDQSHEHWVSVIRQLIHLG
MVTQNIAQHSALQLTEAARPVLRGEVPLQLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSPSEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaattgggggctaaacaggttttacaggaaacc
tttggctaccaacagtttcgcccaggccaggaagagatcattgagacggtcgtctcgggt
cgtgattgcctggttgtcatgccgaccggcggcggcaaatccctgtgttaccagattcca
gccttactgcttaacggactcaccgttgtcgtttcgccgcttatctccctgatgaaagat
caggtcgaccagttgctggcaaacggcgtggcggcggcgtgcctgaactcgacgcagagc
cgtgaacagcagcatgaggtgatggccggttgccgaaccgggcaggttcgcctgctgtat
attgcgccggagcgcctgatgctggataacttccttgagcatctggcgcactggaatccg
gtcttactggccgtcgatgaagcgcactgtatctcgcagtgggggcatgacttccgcccg
gaatacgccgcgctcggtcagctccgccagcgttttccttccctgccgtttatggcgttg
accgccaccgcagatgacaccacccgactggatattgttcgcctgctggggctgaacgat
ccgttaatccagatcagcagctttgaccgtccgaacatccgctacatgctgatggagaaa
tttaagccgctcgatcagctgatgcgctatgtgcaggaacagcgcggcaagtccggtatc
atctactgtaacagtcgggcgaaggtggaggacaccgccgcacgtctgcaaagtcgcggc
atcagcgcggcggcgtatcatgccggtcttgaaaataacgtgcgcgccgatgtgcaggag
aagttccagcgcgacgatctgcaaatcgtcgtggcgaccgtcgcatttggtatgggcatt
aacaaacctaacgtgcgttttgtggtgcatttcgatattccccgtaacattgaatcctac
tatcaggaaaccggccgcgccgggcgtgacggcctgcccgcagaggcgatgctgttctac
gatccggctgatatggcgtggctgcgccgctgtctggaggagaaacccgccgggcagcta
caggatattgaacggcataaactgaacgcgatgggggcgtttgccgaagcgcagacctgt
cgtcgtctggtgctgctgaactactttggcgaagggcggcaggaaccctgcggcaactgc
gatatttgcctcgacccgccaaaacagtacgacggcctgatggatgcgcgtaaagccctg
tcgacgatttatcgcgttaatcagcgttttggtatgggctatgtggtggaagtattgcgc
ggcgcgaacaatcagcgtatccgcgatttagctcatgacaaattgccggtgtacggcatt
ggtcgcgatcagagccatgagcactgggtcagcgtgattcgtcagcttattcatctgggt
atggttacgcagaatattgcccaacattcggcgttgcagttaaccgaagcggcgcgtccg
gtgctgcgtggcgaagtgccgttgcagcttgccgtgccgcgtatcgtcgcgttgaagccg
cgagtgatgcagaaatctttcggcggcaattacgatcgcaaactgttcgccaaactgcgc
aaattgcgtaaggccattgccgatgaagagaatatcccgccgtatgtcgtctttaacgat
gcgacgctgattgaaatggccgaacagatgccggtttcgccgagtgaaatgctgagcgtt
aacggcgtcggcatgcgcaagctggagcgtttcggtaaagagtttatggcgctgatccgc
gcgcatgtcgatggtgacgacgaagagtag
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