Citrobacter koseri: CKO_04254
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Entry
CKO_04254 CDS
T00592
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cko
Citrobacter koseri
Pathway
cko03410
Base excision repair
cko03430
Mismatch repair
cko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKO_04254
03430 Mismatch repair
CKO_04254
03440 Homologous recombination
CKO_04254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cko03400
]
CKO_04254
DNA repair and recombination proteins [BR:
cko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CKO_04254
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CKO_04254
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKO_04254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
ABV15312
UniProt:
A8AP99
LinkDB
All DBs
Position
complement(3945106..3946839)
Genome browser
AA seq
577 aa
AA seq
DB search
MKQQIQLRRREADETAELPADLPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIVVVGDFDADGATSTALSVLGMRSLGCNNISYLVPNRFEDGYGLSPE
VVDQAHARGAQMIVTVDNGISSHTGVEHARALGIPVVVTDHHLPGDTLPDAEAIINPNLR
DCDFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGITPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSRETLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEAQFEHFQQRFGELVTEWLDPSLLQGEVVSDGPLSVAEMTME
VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
CWPDNGVREVQLAYKLDINEFRGNRSLQLIIDHLWPN
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcggcgtgaggccgacgagacagctgagctgccagcc
gatctgccgccgctgctgcgccgtttatacgccagccggggcgtacgcagcgcgcaggag
ctggagcgcagcgtaaaagggatgctgccgtggcagcagcttagcggcgtcgaaaaggcg
gttgagatcctctataacgcgtttcgcgaggggactcgcatcgtcgtcgtgggcgatttt
gacgcggatggcgccaccagtacggcgcttagcgtcctcggtatgcgttcgctgggctgt
aacaatatcagctacctggtgccaaaccgttttgaagacggctacggattaagcccggaa
gtggtcgatcaggcgcatgctcgcggcgcgcagatgattgtgacggtggataacggtatc
tcttctcataccggtgtggaacatgccagagcgttggggattccggtggtggtgaccgat
caccacctgccgggcgatacgctacctgacgcagaagccatcattaacccgaatctgcga
gattgcgatttcccgtcgaagtcgctggcaggcgttggcgtggcgttttatctgatgctg
gcgctgcgcactttcctgcgtgataaaggctggtttgatgagcgtggcattacgccgccg
aatctggcggaactgctcgacctggtcgcgttaggcacggtggcggacgtggtgccgctg
gacgccaataaccgcatcctgacgtggcaggggttgagccgtatccgcgccgggaaatgt
cgcccaggcattaaggcgctgcttgaggtgtcgaaccgcgatccgcagaagctggcggcc
agcgatttaggctttgcgctggggccgcgtctgaatgccgcagggcggctggatgatatg
tccgtcggcgtggcgttgctgctgtgtgataacatcggcgaagcgcgggtgctggcgaat
gaactggatgcgctgaaccagacgcgtaaagagatcgaacaggggatgcaggcggaagcg
ctgaccctgtgcgagaaactggaacgcagccgtgaaacgctgcctggcggcctggcgatg
taccatccagaatggcatcagggcgtggtcggcattctggcttcgcgcattaaagagcgc
ttccatcgcccggtgattgcctttgcgcccgccggtgacggtacgctgaaaggttccggt
cgttccattcaggggctgcatatgcgcgatgcgctggagcgtctggatacgctgtatccg
gggatgatgctcaaattcggcggccatgcgatggcggcaggattgtcgctggaagaggcg
cagtttgaacatttccagcagcgttttggcgagctggtgaccgaatggctcgacccatct
ctgctacagggcgaagtggtttctgatggcccgctgagcgtggctgagatgacgatggaa
gtggcgcaactgctgcgtgacgcagggccgtgggggcagatgttcccggaaccgctgttt
gacggacgttttcgcctgttgcagcagcggctggtcggcgaacgccacctgaaagtgatg
gtcgaaccggttggcggcggcccgctgctggacggcattgcgtttaacgttgataccgcc
tgctggccggataacggcgtacgcgaagttcagcttgcctataagcttgatatcaacgag
tttcgcggcaaccgtagcctacagctgatcattgatcacctctggccaaattga
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