Citrobacter koseri: CKO_04562
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Entry
CKO_04562 CDS
T00592
Name
(GenBank) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cko
Citrobacter koseri
Pathway
cko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKO_04562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cko03019
]
CKO_04562
03016 Transfer RNA biogenesis [BR:
cko03016
]
CKO_04562
Enzymes [BR:
cko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CKO_04562
Messenger RNA biogenesis [BR:
cko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CKO_04562
Transfer RNA biogenesis [BR:
cko03016
]
Prokaryotic type
tRNA degradation factors
CKO_04562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ABV15616
UniProt:
A8AQ53
LinkDB
All DBs
Position
complement(4214229..4216397)
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AA seq
722 aa
AA seq
DB search
MCRQKLRKGIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK
AKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVN
EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDE
LKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKP
RWDWQQEAVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLD
ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQ
ALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKR
GVLAVMPEMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV
KEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA
RLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI
EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLV
HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPAAEQ
GE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgtgccgtcaaaaattaagaaagggtattattttgcttaatccgatcgttcgtaaattc
cagtacggtcagcataccgttacgctggaaactggcatgatggcgcgtcaggcaactgcc
gccgttatggtaagcatggatgacactgcggtattcgttaccgttgttggtcagaaaaaa
gcgaagccgggccaggatttcttcccgctgaccgttaactatcaggagcgtacttacgct
gctggccgtatcccgggcagcttcttccgtcgtgaaggccgtccgagcgaaggcgaaacc
ctgatcgcgcgtctgattgaccgcccggttcgtccgctgttcccggaaggcttcgttaac
gaggttcaggttatcgcaaccgtcgtttccgttaacccgcaggttaacccggatatcgtc
gcgatgatcggtgcttccgccgcgctgtctctgtccggcattccgttcaacggcccgatt
ggcgccgcgcgtgttggttatatcaatgaccagtatgtactgaacccgactcaggacgaa
ctgaaagaaagtaagctggacctggtggttgccggtactgaagcggctgttctgatggtt
gaatccgaagcagaactgctgagcgaagacaccatgctgggcgccgtggtattcggtcac
gagcagcagcagattgtgattcagaacatcaacgatctggtgaaagaagcgggcaaaccg
cgttgggactggcagcaggaagcggtaaacgaagcgctgaacgcgcgcgttgctgcactg
gccgaagctcgcctgagcgacgcttaccgtatcaccgacaaacaggagcgttatgctcag
gttgacgtgatcaaatctgaaaccatcgctgcgctggttgcagaagacgaaaccctggac
gaaaacgaactgggcgaaatcctgcacgcgatcgagaaaaacgttgttcgtagccgcgta
ctggccggcgagccgcgtattgatggccgtgaaaaagacatgatccgtggtctggacgtg
cgtactggcgtgctgccgcgtactcacggttccgcgctgttcactcgtggcgaaacgcag
gcgctggtcacggcgacgctgggtaccgctcgtgacgcgcaggttcttgatgaactgatg
ggcgaacgcactgacagcttcctgttccactacaacttccctccgtactccgttggcgaa
accggcatggtcggttctccgaagcgtcgtgaaattggtcacggtcgtctggcgaagcgc
ggcgttctggcagttatgccggaaatggacaaattcccgtacaccgttcgcgtggtgtct
gaaatcaccgaatccaacgggtcttcctctatggcttccgtgtgtggcgcttccctggcg
ctgatggacgcaggcgtgccgattaaagcggccgttgcgggtatcgcgatgggtctggtg
aaagaaggcgacaactttgttgttctgtctgacatcctgggcgacgaagaccacctgggc
gatatggacttcaaagtggcgggttcccgcgacggtatctctgcgttgcagatggatatc
aaaattgaaggtatcaccaaagagatcatgcaggttgcgctgaaccaggcaaaaggtgcg
cgtctgcacatcctgggcgtgatggaacaggcgatcaacgcgccgcgtggcgacatttct
cagttcgctccgcgtatccacaccatcaagatcaacccggacaagatcaaagacgttatc
ggtaagggcggttctgttatccgtgctctgaccgaagaaaccggcaccaccatcgaaatc
gaagatgacggtacggtgaagatcgcggcgaccgacggcgaaaaagcgaaacatgctatc
cgtcgtatcgaagagatcactgcggaaatcgaagtgggccgtatctacaatggtaaagtg
acccgcatcgttgactttggcgcgtttgttgccattggcggcggtaaagaaggtctggta
cacatctctcagatcgctgacaagcgcgtagagaaagtgaccgattacctgcaaatgggt
caggaagtaccggttaaagttctggaagttgatcgccagggccgcgtacgtctgagcatt
aaagaagcaactgagcagtctcaaccagctgctgcgccggaagctccggcagcagaacag
ggcgagtaa
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