Corynebacterium kroppenstedtii: ckrop_1310
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Entry
ckrop_1310 CDS
T00896
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ckp
Corynebacterium kroppenstedtii
Pathway
ckp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ckrop_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckp03019
]
ckrop_1310
03009 Ribosome biogenesis [BR:
ckp03009
]
ckrop_1310
Enzymes [BR:
ckp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ckrop_1310
Messenger RNA biogenesis [BR:
ckp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ckrop_1310
Ribosome biogenesis [BR:
ckp03009
]
Prokaryotic type
rRNA helicases
ckrop_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
ACR18054
UniProt:
C4LJP9
LinkDB
All DBs
Position
complement(1561699..1564170)
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AA seq
823 aa
AA seq
DB search
MADEPTTPTEFETDSVKGGESGSSAMGNESEGPTQGTDMSVNENVDEQRGAEDDALTLDD
VISVDSVDDSKDKSEPVTSSDVADSGDEAHTASTENGGDETRAEDAPEQDDASDQDAPAK
ETSDKENSDDDASGKESSDKDASTDTDDDDDEGPSFDDLDLSDDVVRAVKKVGFETPSPI
QAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQALVLSPTRELALQVAD
AFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDHLERGSLDLSELKY
LVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKS
QQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNTEELAEKLRARGFSA
AAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHR
IGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDEVNETRKAKFAQSIT
ESLADPQVDLFRGLINSYAEEHETPLADIAAALATQSQSGDEFLLKEDTIRRNDRRNDRR
GRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKIAVGKRQQVRPGAIVGAIANEGG
LNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIKIEPDPGAPAGRPGAHKR
DRQSGDRRGGRFNDRGHGDRRSRGRDGGRGFNDRGFRGRGRDDRGRGGRDSWDRGDRRRD
GGRNDRRDGGRNDRNRGGRGWNGRGGRGFNDRGFRGRGRDDRY
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgagcccaccaccccgaccgaatttgagacagactccgttaagggaggcgag
agcggaagctccgcaatgggaaatgagagtgaaggcccgacgcagggcactgacatgagt
gtgaatgagaatgtggacgagcaacgtggcgctgaggatgatgcgttgacgttggacgac
gtgatctccgttgattcggtggatgattcgaaggataagtctgaaccggtgacgagctca
gacgtggcagatagcggggatgaggcgcacaccgcttcgactgaaaacggcggtgacgaa
acccgtgcggaggatgcgcctgagcaggacgacgcgtccgatcaggatgcgccggccaaa
gaaacgtcggacaaagaaaactccgacgacgatgcgtctggcaaggaatcgtcggacaaa
gatgcatcaacggacaccgatgatgacgacgatgagggcccgtctttcgacgacctggac
ttgagcgatgacgtcgtccgtgctgtgaaaaaggtcggatttgagaccccgtcgccgatt
caggcggctacgattccgattctcgctcaggggcgggatgttgtcggcttagctcagacc
ggtaccggtaagactgctgcttttgcgctgccgatcctgtcgcggttggaccgctcgcag
aagaagcctcaggcattggtgttgtcgccgacgcgtgagcttgcgctgcaggtggcggat
gcgttccaggagttcgctgatcacttgggtggcgtgcatgtcctcccgatttatggtggc
cagtcgtatggcattcagttgtcggggttgcggcgtggagcccacatcgtggtgggtacg
cccggtcgcgtgattgatcatttggaacgcggcagcctggatctttctgagctcaaatac
cttgtcttggatgaggcggatgagatgctcaacatgggtttccaggaggatgttgagcgt
attctcgccgacactccggaacataagcagacggcgttgttctctgcgacgatgccggcg
tcgatccgtcggttgtcaaagcagtacctggaggatccgcgtgaagttacgattaagtcg
cagcagcgcacggcggacaacatccaccagcagtatttgctggtcaaccaccactacaag
ttggacgcgttgacccgtatcctcgaggtcaccgagttcgacgcgatgatcatgttcgct
cggacgaagcagaacaccgaggaactcgcggagaagcttcgtgctcgcggtttctctgct
gccgcgattaatggcgacatggcgcagaatcagcgtgagcggaccgtcgatcagttgcgc
gatggtcgcttagacattctcgttgcgacggatgtggccgctcgtggcctggatgtggag
cgcatttcccacgtcgtcaactatgacattccgcacgatacggagtcctatgtgcaccgt
attggacgtaccggccgggcggggcgctcgggtgaggcgatcttgttcgtgaccccgcgt
gagcggcgtttgctgcggtccatcgagcgtgcaaccaagtcctcgattgaggaaatgcaa
ttgccgacggttgatgaggtcaatgagacccgcaaggccaagtttgcgcagtcgatcacg
gagtccttggcggacccgcaggttgatttattccgtggcctgatcaactcctacgccgag
gagcacgaaacaccgctggcagatattgctgctgctctcgcaacccaatcgcaatcgggt
gacgaattcctgctgaaggaagacaccatccgacgcaacgatcgtcgcaatgatcgacgc
ggccgccggaatgaccgcgagcccgatacccgtagcctgaatgagcgtttcagcggcaaa
gagcccccgcggttcacggatcgcacaggtaaagaaatggctgtgtacaaaatcgcggtg
ggtaagcgtcagcaggttcgccccggcgcgatcgtgggtgccatcgcaaatgaaggcggc
ctcaactcccgtgattttggtaagatttcgatcttctcggagcactccttggttgagctt
cctgcggatctaccgatggaagtttttgaggcgttggaggacacgcgtgtgtccggccag
ctcattaagatcgagccggatccgggtgcgccagcgggacgaccgggtgcgcacaagcgg
gatcgtcagtcgggcgatcgtcgcggcggacggttcaatgatcgtggtcatggtgaccgt
cgttcacgtggtcgtgatggtggccgtggtttcaatgaccgtggattccgtgggcgtggc
cgtgatgaccgcggccgcggtggtcgcgattcatgggatcgtggagaccgacgccgcgac
ggtggtcgcaatgatcgtcgtgatgggggccgcaatgatcggaaccgtggtggccggggt
tggaacggccgaggcggtcgcggctttaacgaccgtggtttccgtgggcgtggtcgcgac
gaccggtactaa
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