Clostridium kluyveri NBRC 12016: CKR_1879
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Entry
CKR_1879 CDS
T00832
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ckr
Clostridium kluyveri NBRC 12016
Pathway
ckr03410
Base excision repair
ckr03430
Mismatch repair
ckr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ckr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKR_1879
03430 Mismatch repair
CKR_1879
03440 Homologous recombination
CKR_1879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckr03400
]
CKR_1879
DNA repair and recombination proteins [BR:
ckr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CKR_1879
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CKR_1879
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKR_1879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5032
NCA2
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BAH06930
UniProt:
B9E355
LinkDB
All DBs
Position
complement(2107263..2109050)
Genome browser
AA seq
595 aa
AA seq
DB search
MKRRWMLKRCNKDVKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQDPLSMK
DMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCGAKVKYHIPDRIEEGYG
INIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEKTY
LIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFIQVLYKKFNFKKEQCYKFIQYAAIGTIC
DIVDLIDENRIIVKKGLDMINNTENLGLKALIEETSLKGKNITSYHIGFIIGPCINATGR
LKSAVLALELLLCKDAEKAGKLAKKLHELNIQRQDMTVKSLNNIIDKVENSNLKRDKVLV
VYEKETHESIAGIVAGRLKDRYNVPSIVITSGRIMSKGSGRSIEGYNMFEELVKCKELME
KFGGHPLAAGLSITEENINRLRENLNKNCNLTEEDLIPKIRIDKKLPLENISFHVLEDIK
KLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLKLFCRLKNSLKKIDAIAFDGGEKFKK
LILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEFNGVKNLQLVIKDFRLTSKNK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
ttgaagagaagatggatgcttaaaaggtgtaataaagatgtaaaatatatttcaaaaaag
gcaggaataagtgaaattatggcaactattcttgcaaatagaggtattgtagaagagaaa
gaaataagagactttttaaatccctctgtagacaatttacaagaccccttgtctatgaag
gatatggaaaaaggtacggatataatatataaggccataatggataataaaaatatagcc
atatatggtgattatgacgtggatggagtaatgagtacctatatattatactgtggtctt
ttaaaatgcggagcaaaagttaaatatcacataccggatagaatagaagaggggtacggt
ataaatataaaaagtatagaaaagttaaaagaagaaggatgtgaagttataataacctgt
gacaatggtatttctgcactggctcaggttaaaagagctaaagagcttggcattgccgtg
gtgattacagatcaccaccatatattttttgaggaacgggaaaatggggaaaagacatat
ttaatacccgaggcagatgcagttatagaccctaaacaggaggattgttcatatcccttt
aaacatctctgtggtgcaggggtggcttttaaatttattcaggtactttataaaaaattt
aattttaaaaaagaacagtgttataaatttattcaatatgctgctataggaactatatgt
gatatagttgatctaatagatgaaaacagaattatagttaaaaagggacttgatatgata
aataatactgagaatctggggttaaaagcacttatagaggaaacttcgttaaaaggtaaa
aatatcacttcctaccatataggttttattataggcccttgtataaatgccacgggaaga
cttaaaagtgcagttttggcattggaacttttgctgtgtaaagatgcagaaaaggccggt
aaacttgcaaaaaaacttcatgaattaaatatacagagacaggatatgacggttaaaagt
ttaaataatataatagataaagtggaaaattcaaatttaaaaagggataaggtacttgta
gtatatgaaaaagaaactcatgaaagtatagcaggcatagtggcagggagacttaaagac
agatataatgtaccttctatagtaataacatcgggaagaattatgtcaaaaggttcaggc
agatcaattgagggctataacatgtttgaagaacttgtaaaatgcaaagaattaatggaa
aagtttggtggacatcctttggcagcgggattatccataacagaagaaaatataaataga
ttaagagaaaatttaaataaaaattgtaatcttacagaagaggatttaatacccaaaatc
aggatagataaaaaactgcctcttgagaacatatcttttcacgtgctggaagatataaaa
aaactggaaccttttggaaaaggtaattccactcctttatttggagaaaaaaatatagat
gtatttaaaatttattttatgggaaaggataaaaatgtattaaaattattttgcagattg
aaaaatagcctaaaaaaaattgatgcaatagcctttgatgggggagaaaaatttaaaaaa
ttaatacttgaagtctatggaagtagtggtgcaaataaaatttttaataataattttacc
agtttaaaaatggattttatatttttaccctgtattaatgaatttaatggtgttaaaaat
cttcaacttgtaataaaagattttagactcacgtcaaaaaataaataa
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