Clostridium kluyveri NBRC 12016: CKR_2097
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Entry
CKR_2097 CDS
T00832
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ckr
Clostridium kluyveri NBRC 12016
Pathway
ckr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKR_2097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckr03019
]
CKR_2097
03400 DNA repair and recombination proteins [BR:
ckr03400
]
CKR_2097
Enzymes [BR:
ckr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKR_2097
Messenger RNA biogenesis [BR:
ckr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKR_2097
DNA repair and recombination proteins [BR:
ckr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKR_2097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
3-dmu-9_3-mt
Motif
Other DBs
NCBI-ProteinID:
BAH07148
UniProt:
B9E3S3
LinkDB
All DBs
Position
complement(2381041..2383206)
Genome browser
AA seq
721 aa
AA seq
DB search
MIVIGNAEEVLHKYYGYETFKKHQKEVIESILSGRDTLAIMPTGGGKSICYQIPAVLFKG
VTIVISPLISLMKDQVDNISELGIRASYINSSISQQEILSIFSDLRNGKVKILYVAPERL
DSPEFYQLMKTIEVSQVAVDEAHCVSQWGHDFRISYTHICKFIENFSKRPVVTAFTATAT
EEVREDIVNQIKLKKEAVFISGFDRENLKISCLKTGNKLQYLLNYVKTNEAQSGIIYAST
RKEVDNIYEKLKANDLSVTRYHAGLPDRDRKINQEDFVYDKANIIVATNAFGMGIDKSNV
RYVIHYNMPGNIESYYQEIGRAGRDGESSECILMFSAQDVITQKYLIEMSIQSPERRINE
YKKLQHMIDFVHYNGCLRKFILNYFGEEVNYNQCDNCSNCINSGEYVDKTLDAQKVISCV
YRMKREFGVNMIVDVLRGSSQKKVLHYGFNKLSTYGIMKDYSKEALSNFINTIIAHKYIT
LKEGEYPTVVLNAQSIKVLKGEEKVILKESVKANKITAHNDLFEILRNLRREIALEESIP
PYMVFSDATLKELSIRYPIDSNQILDISGVGDLKLKKYGERFLNIIKKYIEENKIEPNWS
FKGSITSKSERKNDKPKTHHITINMLRDNMGIKEIAKKRQLTLSTILTHITKYFEEENVM
DINIKFEELFTYSEEREVLKVIDKVGISKLKPIKELLPDSINYDKIRAIIVKNYILKEVV
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgatagtgattggcaatgctgaagaagttctgcataaatattatggctatgaaactttt
aaaaagcatcagaaagaagtaattgaaagtatattaagtggaagagacaccctggcaatt
atgcctacaggcggaggaaaatctatatgttatcaaatacctgcagtgctttttaaaggg
gtaactatcgtcatatctcctttaatttctcttatgaaagatcaggtagataacataagt
gaattaggtataagggcgtcttatataaatagttctatttctcagcaagaaattttaagt
atattttcagatttaaggaatggaaaagtaaaaatattatatgtagcaccggagagatta
gattctccagaattttatcagcttatgaaaaccatagaagtttcgcaggtggcggtagat
gaagcacattgtgtatcccagtggggacatgattttagaataagctacacacatatatgt
aaattcatagaaaacttttctaaaagaccggtggttacagcatttactgccacagccact
gaagaagtgagagaagatattgtaaaccagataaaattgaaaaaagaggctgtttttata
tcaggatttgacagagaaaatttaaagatatcatgtcttaaaactggaaataaattacaa
tatttattaaattatgttaaaacaaatgaagcacaatctggaataatatatgcatccacc
agaaaggaagtggataatatatatgaaaaacttaaggcaaatgatttatctgttacaaga
tatcatgcaggattgccagacagggacagaaaaataaatcaggaagattttgtatatgac
aaggcgaatataatagtggctaccaatgcctttggaatgggtattgacaaatcaaatgta
agatatgtaattcactataatatgcctggaaatatagaaagttattatcaggaaataggc
agggcaggccgtgatggagaatccagtgagtgtatattaatgttttccgcgcaggatgta
attacccagaaatatttaatagaaatgagcatacaatctccagaaagaagaataaatgaa
tataaaaagcttcagcatatgatagattttgtgcattataatggttgtcttagaaaattc
atattaaattattttggagaggaggtaaattataatcagtgtgataattgtagtaattgt
ataaattccggggaatatgtggataaaaccctagatgcacaaaaggttatctcctgtgta
tataggatgaaaagggaatttggagtaaatatgatagtggatgttttaaggggttcttct
caaaaaaaggtacttcattatggatttaataaactatccacttatggcataatgaaagat
tattcaaaagaagcattatcaaattttataaataccattatagctcataagtatataacc
ttaaaagaaggagaatatccaactgtggtgttaaatgcccagtctataaaagttttaaaa
ggtgaagaaaaagtaattttaaaagaatcagttaaagcaaataaaatcaccgcccataat
gatctatttgaaatacttagaaatttaagaagagaaatagctttggaagaatctattcca
ccctatatggtattttcagatgcaactttaaaggaactaagtataaggtatccgatagat
tcaaatcaaatactggatatatcaggagtgggggatttaaaattaaaaaaatatggtgaa
agatttttaaatattataaaaaaatatatagaggaaaataaaattgagcccaactggtca
tttaaaggtagtattaccagtaaaagtgaaagaaaaaatgacaaacccaaaacccatcat
ataacaattaatatgcttagagacaatatgggcataaaagaaattgcgaaaaaaagacaa
ctcaccctatctacaatacttactcatattacaaaatattttgaagaagaaaatgttatg
gatataaatataaaatttgaagagttgtttacctattcagaggaaagagaagttttaaag
gtcatagataaagttggtatatctaagttgaaacccataaaagaattacttccagatagc
ataaattatgataaaataagagctattatagtaaaaaattatatcttaaaagaggtggta
aaatga
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