Clostridium kluyveri NBRC 12016: CKR_3072
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Entry
CKR_3072 CDS
T00832
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ckr
Clostridium kluyveri NBRC 12016
Pathway
ckr03420
Nucleotide excision repair
ckr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKR_3072
03430 Mismatch repair
CKR_3072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckr03400
]
CKR_3072
Enzymes [BR:
ckr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKR_3072
DNA repair and recombination proteins [BR:
ckr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKR_3072
MMR (mismatch excision repair)
Other MMR factors
CKR_3072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
CYP38_PsbQ-like
Motif
Other DBs
NCBI-ProteinID:
BAH08123
UniProt:
B9DWN0
LinkDB
All DBs
Position
complement(3456192..3458456)
Genome browser
AA seq
754 aa
AA seq
DB search
MYIKQEWVFMDLKNLLNKEQYEAVTTVEGPLLILAGAGSGKTRVLTYRIAHMIKDLNIYP
SKILAITFTNKAAGEMKDRIRKLVGDEVDSMWVSTFHSSCVRILRREIDKLGYNRNFAIY
DSYDQKVLIKQCMKELNMDDSITDKEIINRISRQKDNLISQDRFKKENEGNFRMNKIADV
YVMYQKKLKENNALDFDDLIFKTVQLFKEHPDVLEFYQRKFKYIMVDEYQDTNKSQYEFI
RLLAQVEKNICVVGDDDQCIYAWRGADVENILNFENDYINSKVIKLEQNYRSKANILKAA
NDVISNNFHRKQKVLKTANDSGDKIKLYRATTDIDEGRYIASRIKEILNIDKDKHYRDFA
VLYRKNVQSRIFEDVFMKSNIPYRIIGGLKFYDRKEIKDILAYLKFINNPLDNVSLRRII
NVPKRNIGEATIQKIQSFADSMDESIYNALLDIDKSMNLTQRSINSIKKFVSLINSFIKS
RDKISVSELIKEILNTTGYLEELKHSKEPDSISRIENLKELVSAAVEFEVTSEDTSLSAF
LEKVTLVSDIDNFDNNADSVVLMTVHSAKGLEFPVVFMVGMENGIFPGIQSLDNPKEMEE
SRRLCYVGITRAKENVYMTFADTRRVFGKMVSYKQSDFIDEISDELKEYDNFRKSDINNF
VNRSLSKNIFSYGKKGILNNIPPKRESLSVDNIPQGNYLKPENIKEGIKVKHKKFGVGTI
VSISKKDEDIKLTIVFDNMGIKNLMYGVVPLEAV
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtgtatataaaacaggagtgggtttttatggatttaaagaatcttttaaataaagagcaa
tatgaagcggtgacaactgtagaaggtccattattgattttagctggagcaggttctggc
aagactagagttttaacttatagaatagctcatatgattaaagatttaaatatatatccc
tctaaaatattggccataacttttacaaataaggctgcgggagaaatgaaagatagaata
agaaaactggtaggggatgaagtggacagcatgtgggtatccacatttcattcaagctgt
gtgagaatattgagaagagaaatagataagcttggatacaataggaatttcgccatatat
gacagctatgatcaaaaagtactcataaagcagtgtatgaaggaattaaatatggatgat
agtataactgataaggaaataataaataggattagtaggcaaaaggataatcttatatca
caagataggttcaaaaaggaaaatgaaggcaattttagaatgaataaaatagcagatgta
tatgtaatgtatcaaaagaagcttaaagaaaacaatgctttagattttgacgatcttata
tttaaaacggtacagctttttaaagaacatccagatgtacttgaattttatcagagaaaa
tttaaatatataatggtagatgaatatcaagacaccaataagtcacaatatgagtttata
agattattagcccaggtagagaaaaatatatgcgtagtaggggatgacgatcagtgtatt
tatgcatggagaggtgcggatgtagaaaatattttaaattttgagaatgattatataaat
tccaaggttataaagttggaacaaaactatagatcaaaagccaatatattaaaggccgct
aatgatgtgataagtaataattttcatagaaagcagaaagtacttaaaactgcaaatgac
agtggggataaaataaaattatatagagctaccacagatatagatgaagggagatatata
gcatcccggattaaggaaattttaaatatagataaagataaacattatagggattttgca
gtgctttatagaaaaaatgttcaatcccgtatatttgaagatgtttttatgaaatctaat
ataccttatagaattattggaggattgaaattttatgacagaaaagaaataaaagatatt
ttggcttatttgaagtttataaataatcctttagataatgtaagtttgagaagaataata
aatgtacctaagagaaatatcggagaggctacaatacaaaaaatacaaagctttgcagat
tctatggatgaatcaatatacaatgcccttttagatattgataaaagcatgaatttgaca
caaagaagtattaattccataaaaaaatttgtgagtcttataaatagttttataaaaagc
agggataaaatttctgtatctgaactaataaaagagatattgaatactacagggtatttg
gaagaattgaaacactcaaaagagccagacagtataagtaggatagaaaatcttaaagaa
ttggtatctgcagctgtggaatttgaagttacttcggaagatacgtctctttctgcattt
ttagaaaaggtaacactggtttccgatatagataattttgataataatgcagattcagtg
gtacttatgacagtacatagtgcaaaaggtttggaatttcctgtagtcttcatggttgga
atggaaaatggaatatttccaggaatacagtccttagataatcctaaggagatggaagag
tcaagaagactttgttatgtggggataacaagggcaaaagaaaatgtttatatgacattt
gctgatacaagaagagtatttggcaagatggtatcttataaacagtctgactttatagat
gaaatatctgatgaattaaaagaatatgataatttcagaaaatcagatattaataatttt
gtaaatagatctttaagtaaaaatatattttcatatgggaaaaaaggaatcttaaataat
atacctcctaaaagagaaagtttatctgtagataatattcctcaaggtaattatttaaaa
ccagaaaatataaaagaaggaataaaagtaaaacacaaaaaatttggagtaggtactatt
gtgagtatatccaagaaggatgaggatataaagcttaccatagtttttgacaatatggga
ataaaaaatttaatgtacggtgtagttccactggaggcggtataa
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