Chitinimonas koreensis: H9L41_02105
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Entry
H9L41_02105 CDS
T08620
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cks
Chitinimonas koreensis
Pathway
cks02020
Two-component system
cks02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9L41_02105
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H9L41_02105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cks03021
]
H9L41_02105
Transcription machinery [BR:
cks03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9L41_02105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
DUF2344
Motif
Other DBs
NCBI-ProteinID:
QNM97147
LinkDB
All DBs
Position
complement(525931..527412)
Genome browser
AA seq
493 aa
AA seq
DB search
MKPSLQLKLSQSLTLTPQLQQSIKLLQLSTLDLNQEIERFLQDNPMLEREDEGEPETHAV
REDGAPAEGPADYAAPTAEAPPAAAEDAPAGEPDFDFDDALGDNYWSEAAGGGRQREDDD
EFDPHANVARVFTLREHLLEQLGLLPISQRDHAVATLVIDALDDDGYLTTPLEEIFELIP
ESLREELEIELEELQVAWQLIRQLEPAGVGAVNLGDCLTLQLKQFHADEAACALACTVVA
DCLDLLANKDYSRLKKTLKCDDEELKAAQTLIQRLNPRPGAAFGATDTRYVVADVVVKKQ
RQGWTVQLNEAAMPKLKVNQLYANILRQHRENGAGLSGQLQEAKWLIKNVQQRFETILRV
AQAIVEKQQRFFEHGEVAMRPLVLRDIAEELDLHESTISRVTTQKYMLTPRGIYEFKYFF
GSHVETDSGGECSAIAIKALIKQLIQNEDGKKPLSDSTIADVLGKQGINVARRTVAKYRE
ALQIPPVNQRKSL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatccctccagctcaagctctcccagtccctcacgctgacgccgcaactgcag
cagtcgatcaagctgctgcagctgtccacgctcgatctgaaccaggagatcgaacgattc
ctgcaggacaacccgatgctcgagcgcgaggacgagggtgagcccgagacccacgcggtc
cgcgaggacggcgcgccggccgaaggcccggccgactacgccgcgccgacggccgaggcg
ccgccggcggcggccgaggacgcgccggccggcgagcccgacttcgacttcgacgacgcg
ctcggcgacaactactggagcgaggccgccggcggcggccgccagcgcgaggacgacgac
gagttcgacccgcatgccaacgtcgcccgcgtgttcacgctgcgcgagcacctgctcgag
cagctcggcctgctgccgatcagccagcgcgaccacgcggtcgccaccctggtgatcgac
gcgctcgacgacgacggctacctgaccaccccgctcgaagaaatcttcgagctgatcccg
gaatcactgcgggaggagctcgagatcgagctcgaggaattgcaggtcgcctggcaattg
atccgccagctggaacccgccggcgtcggcgcggtcaacctgggtgattgcctgaccctg
cagctcaagcagttccatgccgacgaagcggcctgcgcgctggcctgcacggtggtcgcc
gactgcctcgatttattggcgaacaaggactacagtaggctcaagaagacgctcaaatgc
gacgacgaggaactgaaggcggcgcagacgctgatccagcgtctcaaccctcgccccggt
gccgcgttcggcgcgaccgacacccgctacgtcgtggccgacgtggtggtcaagaagcag
cggcagggctggacggttcagctcaacgaagccgcgatgcccaagctcaaggtgaaccag
ttgtacgccaacatcctgcgacaacaccgcgaaaacggagccggcctgtcgggccagttg
caggaggccaagtggctgatcaagaacgtccagcagcgcttcgaaaccatcctccgcgtc
gcccaggccatcgtcgagaaacagcagcgcttcttcgagcacggcgaggtcgccatgcgc
ccgctggtgctgcgcgacatcgccgaggagctcgacctgcatgaatcgaccatctcgcgc
gtgaccacccagaagtacatgctcacgccgcgcggcatctacgagttcaagtatttcttc
ggcagccacgtcgagaccgactccggcggcgaatgctcggccatcgccatcaaggcgctg
atcaagcagctgatccagaacgaagacggcaagaagccgttgagcgacagcacgatcgcc
gacgtgctcggcaagcagggcatcaacgtcgcccgccgtaccgtcgccaaataccgtgaa
gccttgcaaatccctcccgtgaaccaaagaaagtccctatag
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