Chitinimonas koreensis: H9L41_05580
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Entry
H9L41_05580 CDS
T08620
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cks
Chitinimonas koreensis
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cks03016
]
H9L41_05580
Enzymes [BR:
cks01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H9L41_05580
Transfer RNA biogenesis [BR:
cks03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H9L41_05580
Prokaryotic type
tRNA splicing ligases
H9L41_05580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Glyco_hydro_67N
Motif
Other DBs
NCBI-ProteinID:
QNM97753
LinkDB
All DBs
Position
complement(1312027..1313241)
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AA seq
404 aa
AA seq
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MNKYDTLAVPHGAPIKMWTQGVPVEEEARAQLMNTARMPFIYKHLAVMPDVHLGKGSTIG
SVIPTLGAIIPAAVGVDIGCGMMAARTTLTAADLPDDLAGLRSAIEAAVPHGKTMGKRDK
GAWEVPPATVDAMWGELHQGFKRITEKHPQLERTNNHKHLGTLGTGNHFIEVCLDEENRV
WFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPHRDLAYFEEGSRHFDDYVEAVGWAQ
DFARRNRAVMMQNVVAAARKVIAKPFAADVEAVNCHHNYVQKETHFGREVLVTRKGAVSA
RKGQLGIIPGSMGARSFIVRGLGNEEAFCSCSHGAGRTMSRTKARKLFTVADQIKATAHV
ECRKDEDVIDEIPMAYKDIDKVMAAQSELVEIVHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagtacgacactctcgccgtgccccacggcgccccgatcaagatgtggacccaa
ggcgtgccggtcgaagaagaagcgcgcgcccagctgatgaacacggccaggatgcccttc
atctacaagcacctggcggtgatgccggacgtgcacctgggcaagggttcgaccatcggc
agcgtgatcccgacgctcggtgccatcatcccggccgcggtcggggtggatatcggctgc
ggcatgatggccgcccgcaccacactgaccgccgcggacctgcccgacgacctggccggc
ctgcgttcggccatcgaagccgcggtcccgcacggcaagacgatgggcaagcgcgacaag
ggcgcctgggaggtcccgccggcgacggtcgacgccatgtggggcgagctgcaccagggc
ttcaagcggatcaccgaaaagcatccgcagctggagcgcaccaacaaccacaagcacctg
ggaacgctgggaaccggcaaccacttcatcgaggtctgcctcgacgaggaaaaccgcgtc
tggttcatgctgcactcgggttcgcgcggcgtgggcaacgccatcggcaacctgttcatc
gaactggcgcaggcggacatgcgccagcacatcgccaacctgccgcatcgcgacctggcc
tacttcgaggaaggcagccggcacttcgacgactatgtcgaagcagtcggctgggcgcag
gacttcgcccggcggaaccgcgcggtgatgatgcagaacgtcgtcgccgccgcccgcaag
gtgatcgccaagcccttcgccgccgacgtggaagcggtgaactgccaccacaactacgtg
cagaaggagacccacttcggccgcgaagtgctggtgacgcgcaagggtgccgtgtcggcc
cggaagggccagctcggcatcatccccggctcgatgggcgccaggagcttcatcgtgcgc
ggactcggcaacgaggaagcgttctgctcgtgcagccatggcgcgggccgcaccatgagc
cgcaccaaggccaggaagctgttcaccgtggcagaccagatcaaggcgacggcccacgtc
gagtgccgcaaggacgaagacgtgatcgacgagatcccgatggcctacaaggacatcgac
aaggtgatggcggcgcagtcggaattggtggagatcgtgcataccttgcggcaggtggtc
tgcgtgaagggttga
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