Chitinimonas koreensis: H9L41_10670
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Entry
H9L41_10670 CDS
T08620
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cks
Chitinimonas koreensis
Pathway
cks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L41_10670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cks03019
]
H9L41_10670
Enzymes [BR:
cks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L41_10670
Messenger RNA biogenesis [BR:
cks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L41_10670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNM98632
LinkDB
All DBs
Position
2491314..2492726
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AA seq
470 aa
AA seq
DB search
MTFASLGLIDPLLQALAALGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QRLAGEGPPVGSNAVRALVLVPTRELAEQVYQSFRAYGQQLPLRYGVAYGGVSINPQMMK
LRRGLDVLVATPGRLLDLMGQNAVKLGQLRTLVLDEADRMLDLGFARELDAVFAALPRRR
QVLLFSATFSDSIRTLAAGLLADPLSIEAGPRNVAARTVAQWLVPVDKKRKPELFCHLLR
DRRWGQALVFVKTRKGAEQLVATLTARGIAADAIHGDKNQPARLRALERFKALEVQILVA
TDVAARGLDIDDLPRVVNLDLPIVAEDYVHRIGRTGRAGASGEAVSLVCADEVPLLAAIE
TLIGQVLPREEEPGFEPDHRVPLTGPQAATAKKKPKKPKVPKQGLPAKPGGAPRQGNPAK
PGAAGKPVPAAKPAAAGKPAVPGQPGGVASPFQLSAPGKPGKPPKGRSGR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgcttccctgggtctgatcgacccgctgctccaggcgctcgccgcgctcggc
tatcaaacccccacgccggtgcaggcgcaggccatcccggcggtgctggccggccgcgac
ctgatggcggccgcccagaccggcaccggcaagacggccggtttcgcgctgcccctgctg
cagcggctggccggcgaagggccgccggtcggcagcaacgcggtgcgcgcgctggtcctg
gtgccgacgcgcgagctggccgagcaggtctaccagagcttccgcgcctacggccagcag
ctgccgctgcgctatggcgtggcctacggcggcgtcagcatcaatccgcagatgatgaag
ctgcgccgcggcctcgacgtgctggtggccacgccgggccggctgctcgacctgatgggg
cagaacgcggtcaagctcggccagttgcgcacgctggtgctcgacgaggccgaccgcatg
ctcgacctcggcttcgcccgcgagctcgacgcggtgttcgccgccttgccgcggcggcgc
caggtgctgctgttctcggccactttctccgactcgatccgcacgctggcggccggcctg
ctggccgatccgctgagcatcgaggccggcccgcgcaacgtggcggccaggaccgtcgcg
cagtggctggtaccggtcgacaagaagcgcaagcccgagctgttctgccatctgctgcgc
gaccggcgctggggccaggcgctggtgttcgtcaagacgcgcaagggcgccgagcagctg
gtcgccaccctgaccgcgcgcggcatcgccgccgatgcgatccacggcgacaagaaccag
ccggcgcggctgcgcgcgctggagcggttcaaggcgctggaggtgcagatcctggtggcg
accgatgtggcggcgcgcgggctggacatcgacgatctgccgcgggtggtcaacctcgac
ctgccgatcgtggccgaggactacgtccaccgcatcggccgtaccggccgggccggcgcc
agcggcgaggcggtttcgctggtctgcgccgacgaagtgccgctgctggcggcgatcgag
acgctgatcgggcaggtgctgccgcgcgaggaggagccgggcttcgaacccgatcaccgg
gtgccgctgaccggcccgcaggcggcgacggcgaagaaaaagccgaagaagccgaaggtg
cccaagcagggtctgccggccaagcccggtggcgcgcccaggcagggcaacccggccaaa
cccggcgcagccggcaaaccggtcccggcagccaagcccgccgcagcgggcaagccggcc
gttccgggccagccgggcggcgtggccagcccgttccagctgtccgctccgggcaagccc
ggcaaaccgcccaagggccgctcgggccgttag
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