Chitinimonas koreensis: H9L41_17410
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Entry
H9L41_17410 CDS
T08620
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cks
Chitinimonas koreensis
Pathway
cks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L41_17410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cks03019
]
H9L41_17410
03009 Ribosome biogenesis [BR:
cks03009
]
H9L41_17410
Enzymes [BR:
cks01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9L41_17410
Messenger RNA biogenesis [BR:
cks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L41_17410
Ribosome biogenesis [BR:
cks03009
]
Prokaryotic type
rRNA processing factors
H9L41_17410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNM95619
LinkDB
All DBs
Position
4138959..4142162
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKSNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVARAYFQDGADGRSRIQDALREGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELRATMDQLDVPGGMSIIARTAGIGRSAEELQW
DLNYLLQLWRAIENAAGAQKGPFLIYQEGSLVIRAIRDYYQPDIGEILIDTEFVYEQARQ
FMSHVMPGFVNRVKVYKDDVPLFSRFQIEHQIETAFSREVALPSGGAIVIDHTEALVSVD
VNSARATKGGDIEETATRTNLEAADEIARQLRLRDLGGLIVVDFIDMEKAGNQREVENRL
RDALRHDRARVQTGKISRFGLMELSRQRLQPSLGETAHQPCPRCHGTGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRADIFAVESRLKVGVVLIPNIHLETPNY
SVVRLRHDDLNHIEEVLPSYKMMEAPAEEEQAHGKDSEPAKPRQEAAVKGITPSQPAPAP
VEKPAPTPVPAPQPEAKPSLFARIVNWFKGEEPVEEAKPAAPAAKGNRERSSNGNGNNRR
GGEGQNRRERGERGERPNQEARRDEQRRGGNKPRIEEDEQARAERQPRGEQKQDRQRSER
SDRGEGQGRNERQAENREPRQPREQRETREGNEPRAEREPRQPREQREPREGGEAPRTER
EPRQPREPREPRAEREPRQPRPQAENKPEAKPEVSSEAAEPAQQELLPIDGAPTEGQEAG
NEGRGRRRRGRRGGRGERTESGQLVEGAEGMAQDDGAAAAEVAAIEAPAAVQDVAAAPAE
VQPVAARAEVEAPAAVAEAPAPALEAAPVAAVETVAPPAVETVAAPAVVESAAPVEAPAV
TEAPTPVETVAVPAAVEAPVAAAVETEVQPAAEPQAEAVVAAQPAAEAAVQAEPVAEVAE
AAAPAPAEAAAAPVEAPVEAVATAPVAAPVAEAPATPQVAEIGRPEDVGLVQVDTKLKAF
EPVELPLEPAAPRRRRSDVKPSQQAAPVQEELVMIETSQAGKSEPSA
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacccaagccgaagagctgcgcgtcgccatcgtcgac
ggccaaaagctcatcgatctcgacatcgagaccgtcggcaaggaacaacgcaagagcaat
atctacaagggtgtcatcacccgcatcgagccctcgctcgaagcctgcttcgtcgactac
ggcaccgaccgccacggtttcctccccttcaaggaagtcgcccgcgcctatttccaggac
ggcgccgacggccgctcgcgcatccaggatgcgctgcgcgaaggcatggaagtcatcgtg
caggtggaaaaggacgagcgcggcaacaagggcgccgcgctgaccaccttcatctcgctg
gccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgccgc
atcgagggtgaagagcggcaggaactgcgcgctaccatggaccagctcgacgtgccgggc
ggcatgtcgatcatcgcccgcaccgccggcatcggccgcagcgccgaagagctgcagtgg
gacctgaactacctgctgcaactgtggcgcgccatcgagaacgccgccggcgcccagaag
ggcccgttcctaatctaccaggaaggcagcctggtcatccgtgcgatccgcgactattac
cagcccgacatcggcgagatcctgatcgacaccgagttcgtctacgaacaggcccgccag
ttcatgagccacgtgatgcccggcttcgtgaaccgcgtgaaggtctacaaggacgacgtg
ccgctgttctcgcgcttccagatcgaacaccagatcgagaccgccttctcgcgcgaagtg
gccctgccttcgggcggcgccatcgtgatcgaccacaccgaggcgctggtctcggtcgac
gtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgacccgcaccaac
ctcgaagccgccgacgagatcgcccgccagctgcgcctgcgcgacctcggcggcctgatc
gtggtcgacttcatcgacatggagaaggccggcaaccagcgcgaggtggaaaaccgcctg
cgcgacgcgctgcgccacgaccgcgcccgcgtgcagaccggcaagatctcgcgcttcggc
ctgatggaactgagccgccaacgcctgcaaccctcgctcggcgagaccgcccaccagccc
tgcccgcgctgccacggcaccggcttcatccgcggtaccgaatcgtcggcgctgcacatc
ctccgcatcatccaggaggaggcgatgaaggagaacaccggcgccgtgcacgctcaggtc
ccggtcgacgtcgccaccttcctgctcaacgagaagcgcgccgacatcttcgcggtggaa
tcgcgcctcaaggtcggcgtggtgctgatccccaacatccacctcgagacgccgaactac
tcggtggtgcgcctgcgccacgacgacctcaaccacatcgaggaagtgctgccgtcgtac
aagatgatggaagcgccggccgaggaagagcaggcccacggcaaggacagcgagccggcc
aagccgcgccaggaagccgccgtgaagggcatcaccccgtcgcagccggccccggccccg
gtcgagaagcccgcgccgacgccggtcccggcgccgcagcccgaggccaagccctcgctg
ttcgcccgcatcgtcaactggttcaagggcgaggagccggtggaagaggccaagccggcc
gcgccggccgccaagggcaaccgcgagcgcagcagcaacggcaacggcaacaaccgccgc
ggcggcgaaggccagaaccgccgcgagcgcggtgagcgtggcgagcgtccgaaccaggaa
gcgcgccgcgacgagcagcgccgcggcggcaacaagccgcgcatcgaggaagacgagcag
gcgcgcgccgaacgccagccgcgcggcgagcagaagcaggatcgccagcgcagcgaacgc
agcgaccgtggcgaaggccagggccgcaacgagcgccaggccgagaaccgcgaaccgcgc
cagccgcgcgagcagcgtgaaacgcgcgagggcaacgagccgcgcgccgaacgcgaaccg
cgtcagccgcgtgaacagcgcgagccgcgcgaaggcggcgaagcgccgcgcaccgaacgc
gaaccgcgccagccgcgtgaaccgcgcgagccgcgggccgagcgcgaaccgcgccagccg
cgcccgcaggccgaaaacaagcccgaagccaagccggaagtgagcagcgaggccgccgag
ccggcgcagcaggaactgctgccgatcgacggcgcgccgaccgaaggccaggaagccggc
aacgaaggccgcggccgtcgtcgtcgtggccgtcgcggtggccgtggcgagcgtaccgag
tcgggccagctggtcgagggcgccgaaggcatggcgcaggacgatggcgccgcagcggcc
gaagtcgctgcgatcgaagcgccggcagccgtgcaggatgtcgccgccgcgccggccgaa
gtccagccggtcgccgcgcgtgccgaggtcgaggcgcctgccgccgtggccgaagccccg
gcccctgcgctcgaagccgcgccggtcgcggccgtcgagaccgtggccccgccagctgtc
gaaacggtggccgcaccggccgtagtcgagtccgccgcgcctgtcgaagcgccggccgtg
accgaagcgcccacgccggtggaaaccgtcgcagtgccggccgccgtcgaagcgcctgtc
gccgcagcggtggagaccgaagtccagccggccgccgagccgcaagccgaagcggtggtc
gccgctcaaccggcagccgaagccgccgtccaggccgaaccggtagccgaagtggccgag
gccgcagcaccggccccggccgaagcagccgccgcaccggtcgaagccccggtcgaagcc
gtcgcaaccgcgccggtcgcagccccggtggcggaagcgcctgccacgccccaggtcgcc
gagatcggccggcccgaggacgtcggcctggtccaggtcgataccaagctcaaggccttc
gagccggtcgaactgccgctcgaaccggccgccccgcgccgccgccgcagcgacgtgaag
ccgtcgcagcaggccgcgccggtgcaggaagagctggtgatgatcgagaccagccaggcc
ggcaagtccgagccgtcggcctga
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