Chitinimonas koreensis: H9L41_20385
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Entry
H9L41_20385 CDS
T08620
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
cks
Chitinimonas koreensis
Pathway
cks03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
H9L41_20385 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cks03400
]
H9L41_20385 (sbcB)
Enzymes [BR:
cks01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
H9L41_20385 (sbcB)
DNA repair and recombination proteins [BR:
cks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
H9L41_20385 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H9L41_20385 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L41_20385 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Shal-type
Motif
Other DBs
NCBI-ProteinID:
QNM96141
LinkDB
All DBs
Position
4819405..4820877
Genome browser
AA seq
490 aa
AA seq
DB search
MTEPTFFWHDYETFGAVPRRDRPAQFAGLRTDLELNPIGEPVSFHCKPSDDFLPDPVSVL
ITGITPQRADELGVGEAEFVGRIHAELAAPGTCGVGYNTLRFDDELTRHLFWRNLYDPYA
REWQHGGSRWDLLDCVRATYAFRPDGIAWPRRADSELPSFKLEHLTAANGLAHAAAHDAL
SDVQATVEFARLLRRLQPRLFDFCFRLRKKDAVAAEIGALDGHAFLHVSGMYPAAQGCLA
PVAAIGWHPVNKNELAVWDLQYDPAELFELDAERIRARLFVRSEALAEGETRLPIKTIHL
NKSPVVVSNLRTLSEPRAAELQLDMAQAQRHSARLAELLARHGKTLAATLREVYRRDEAA
AVPRDVDEALYDGFVGDADRRRLDRLRAATPLELARSASAFDDGRLAELLFRYRARNWPD
SLDANERARWQAHRAERLIDGGYGGYGGLSLAALREQLTLLRAERADDAAALALLDEVEA
FAAAQTAGLG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgactgagccgaccttcttctggcacgactacgagaccttcggcgcggtgccgcggcgc
gaccggccggcccagttcgccggcctgcgcaccgacctggagctcaatccgatcggcgag
ccggtgtcgttccactgcaagccgagcgacgacttcctgcccgatccggtgtcggtgctg
atcaccggcatcacgccgcagcgcgcggacgagctcggcgtcggcgaagccgagttcgtc
ggccgcatccacgccgaactggccgcgccgggcacctgcggcgtcggctacaacacgctg
cgcttcgacgacgagctgacccgccacctgttctggcgcaacctgtacgacccgtatgcg
cgcgaatggcagcacggcggctcgcgctgggacctgctcgactgcgtgcgcgccacctac
gccttccggcccgacggcatcgcctggccgcggcgcgccgacagcgagctgccctcgttc
aagctggagcacctgaccgccgccaacggcctcgcccacgccgccgcgcacgacgcgctg
agcgacgtgcaggccacggtcgaattcgcccgcctgctgcgccggctgcagccgcggctg
ttcgacttctgcttccgcctgcgcaagaaggacgcggtggcggccgagatcggcgcgctc
gacggccatgccttcctgcacgtgtccggcatgtacccggccgcgcaaggctgcctggcg
ccggtcgccgcgatcggctggcacccggtcaacaagaacgagctggcggtgtgggacctg
caatacgacccggccgagctgttcgagctcgacgccgagcggatccgcgcgcggctgttc
gtgcgcagcgaagcgctggccgagggcgagacacggctgccgatcaagaccatccacctg
aacaagtcgccggtggtggtctccaacctgcgcaccttgagcgagccgcgcgccgccgag
ctgcagctcgacatggcgcaggcgcagcgccactcggcgcggctggccgagctgctggcg
cggcacggcaagacgctggccgccacgctgcgcgaggtctaccgccgcgacgaggcggcc
gccgtgccgcgcgatgtcgacgaggcgctctacgacggcttcgtcggcgacgccgaccgc
cgccggctcgaccgcctgcgcgccgccacgccgctcgagctggcccgcagcgcctccgcc
ttcgacgatggccggctggccgaactgctgttccgctaccgcgcccgcaactggcccgac
agcctcgatgcgaacgaacgggcgcgctggcaggcccaccgcgccgaacggctgatcgac
ggcggctacggcggctacggcggcctgtcgctggccgcgctgcgcgagcagctgacgctg
ctgcgcgccgaacgcgccgacgacgcggccgcgctggcgctgctcgatgaggtcgaggcc
ttcgccgcggcgcagacggccgggctgggttag
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