Corynebacterium kalinowskii: CKALI_04365
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Entry
CKALI_04365 CDS
T07849
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ckw
Corynebacterium kalinowskii
Pathway
ckw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKALI_04365 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckw03019
]
CKALI_04365 (deaD)
03009 Ribosome biogenesis [BR:
ckw03009
]
CKALI_04365 (deaD)
Enzymes [BR:
ckw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKALI_04365 (deaD)
Messenger RNA biogenesis [BR:
ckw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKALI_04365 (deaD)
Ribosome biogenesis [BR:
ckw03009
]
Prokaryotic type
rRNA helicases
CKALI_04365 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
adh_short
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
QGU01752
UniProt:
A0A6B8V9H9
LinkDB
All DBs
Position
918904..921021
Genome browser
AA seq
705 aa
AA seq
DB search
MNRYLPRPKSGALRIIGESGVRLGAMSNTDNVASGVEELENVTTSETQDTSQDVNNDVRD
ANTSEDDTTQGFENLGLPAEVLKAIAKVGYETPSPIQSETIPVLMEGRDVVGLAQTGTGK
TAAFALPVLSRIDKSVRAPQALVLAPTRELALQVADAFQEFADHLGGINVLPIYGGQAYG
IQLSGLRRGAQIVVGTPGRVIDHLKKGTLDISGLRFLVLDEADEMLNMGFQEDVERILED
TPEDKQVALFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVSHRNKLDAL
TRILEVTEFEAMILFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRL
DILVATDVAARGLDVERITHVFNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRM
LRSIERATNATLVEMELPTVDEVNESRKSKFADSITSSLEDSQIALFRSLVKEYSEEHDV
PLEDIAAALATQAQAGNDFLLKELPPERRERRERFDRDDRGGDRFERRDRFDRGDRGDRG
DRGARFERNDDMDVYRLAVGKRQHVRPGAIVGALANEGGLSSKDFGRITISVDHTLVELP
KNMPASVLERLADTRISGQLIHIEAAPGADMGPRGGFRERDSDGRRSRDDRRGYRGDRDD
RGGDRGGRGGDRGGDRGGRGGYRGGRDRDDRGGERGGFRGGFRDR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgttatcttccgagaccaaaaagtggcgcgcttcgcattattggggaaagtggc
gtacggttgggtgcgatgagtaacaccgataacgttgccagcggcgtagaagagctggaa
aatgtcacaacgtcggaaactcaggatacttcgcaggacgtcaataatgacgtcagggat
gcgaacacttctgaggacgacaccacgcaaggtttcgaaaacttggggctgcctgcagaa
gtgctgaaggccatcgccaaggttggctatgagaccccatccccaattcagtccgagact
atcccagtcttaatggaaggccgcgacgtcgtcggcctcgcgcagaccggtaccggtaag
actgcagctttcgcgctgccagtgctttcccgcatcgacaagtccgtgcgcgcaccacaa
gccctcgtgcttgccccaacccgcgagctcgcgctccaggtagcagacgcattccaagaa
ttcgccgatcacctcggtggcatcaatgtgctgccgatctacggtggccaggcctacggc
attcagctgtccggtctgcgccgtggcgctcagatcgtcgtgggtaccccaggtcgcgtc
atcgaccacctgaagaagggcaccctggacatctccggtctgcgcttcctcgtcctcgac
gaagccgacgagatgctcaacatgggcttccaagaagacgtcgaaagaattctggaagac
acccctgaggacaagcaggttgctctgttctccgcaaccatgccaaacggcatccgccgc
ctgtccaagcagtacctgaacaacccagccgagatcacggtcaagtccgagactcgcacc
aacaccaacatcacgcagcgattcctcaacgtctcgcaccgcaacaagctcgacgcgctg
acccgcatcctcgaggtcaccgagttcgaagcaatgatcctgttcgtgcgcaccaagcac
gagaccgaagaagttgcagaaaagctccgcgctcgcggtttctccgcagcagccatcaac
ggcgacatcgcccaggctcagcgtgagcgcaccgtggaccagctcaaggatggccgcctg
gacatcctcgtagctaccgacgtcgcagctcgtggcctcgacgtggaacgtattacccac
gtcttcaactacgacattcctcatgacaccgagtcctacgtgcaccgcatcggccgtacc
ggccgtgcaggccgctccggcgaggcaatcctgttcgtgacccctcgcgagcgtcgcatg
ctgcgctccatcgagcgcgccaccaacgcgaccctcgtagagatggaactgccgactgtc
gacgaggtcaacgagtcccgcaagtccaagttcgctgactccattacctcttctttggaa
gattcccagatcgcgctgttccgcagcctggtcaaggaatactccgaggagcacgacgtg
cctctcgaagacattgctgcagccctggctacccaggcgcaggctggcaacgacttcctg
ctcaaggagctcccaccagagcgtcgtgagcgtcgcgagcgctttgatcgtgatgaccgt
ggcggcgaccgcttcgagcgtcgtgaccgtttcgatcgtggtgaccgtggagatcgcggc
gatcgcggtgctcgctttgagcgcaacgacgacatggatgtctaccgccttgcagtgggc
aagcgccagcacgtgcgcccaggtgccatcgtgggcgctctcgccaacgaaggtggcctg
tcctccaaggacttcggacgcatcaccatctctgtcgatcacaccctggtcgagctgcca
aagaacatgccagcctccgtcctggagcgtctcgcagacacccgcatctctggccagctg
attcacatcgaagcagccccaggcgctgacatgggtccacgtggcggtttccgcgagcgt
gactccgatggtcgacgcagccgtgatgatcgacgcggataccgtggcgatcgcgacgac
cgcggtggcgaccgtggcggccgtggtggagatcgcggtggcgaccgtggtggccgtggc
ggctaccgtggtggacgcgatcgtgatgaccgtggtggagaacgtggcggtttccgcggt
ggattccgcgaccgctag
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