Corynebacterium kalinowskii: CKALI_06695
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Entry
CKALI_06695 CDS
T07849
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ckw
Corynebacterium kalinowskii
Brite
KEGG Orthology (KO) [BR:
ckw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckw03019
]
CKALI_06695 (hrpB2)
Enzymes [BR:
ckw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CKALI_06695 (hrpB2)
Messenger RNA biogenesis [BR:
ckw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CKALI_06695 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
NACHT
PhoH
AAA_25
DUF6301
ABC_tran
SLFN-g3_helicase
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
QGU02201
UniProt:
A0A6B8VQR5
LinkDB
All DBs
Position
1402741..1406652
Genome browser
AA seq
1303 aa
AA seq
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MNTPHSPAPAPSKRDLYARLDDVSLAAAHSFRRRLAKARSPRALVAIGQDIAEAEALLAL
RRESLPDVTYPESLPVSARREDIMAAIRDNQVVIIAGETGSGKTTQIPKMCLDLGRGVRG
LIGHTQPRRLAARSVAERISDELGQQIGDSVGYAIRFDDRVSESTTIKLMTDGILLAELQ
RDRLLRAYDTIIIDEAHERSLNIDFLLGYLKNLLPKRPDLKIIITSATIDPERFAEHFCT
ADGTPAPIIEVSGRTYPVEIRYRPLEIEHEDKIIDIDPLDGLVHALEELMAEGDGDILCF
FSGERDIRDAMEVIDKRRFKNIEVVPLFGRLSNEEQHRVFAPHAKRRIVLATNIAETSLT
VPGIHYVIDTGLARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEQD
FDSRPEFTDPEILRTNLASVILQMASLGLGDIAEFPFLQAPDSKAIRDGLLLLHELGAIS
QKENKGAPQLSPIGRTISRIPVDPRLARMLVEADRNGCLDFVIIIVAALTIQDVRERPLD
HQAQADQLHARFKDTSSDFLSYLKLWEYLMEQSRELSGNAFRKLVKREFLHYLRIREWQD
LVRQLRGIVKELGWKTETTPLSADALHQSLLAGLLSHIGQRESDSKEFHGARGTRFMIFP
GSALAKKPPQFIMAAELVDTSRLWARDVAAIDPNWLEQLAGDLLRHQHSEPHWSSKRGAA
MVYQKSTLFGVTVVVDKLVPYHKVDPVSAREMFIRSALIDGQWNTHHQFFHDNVAKLDDV
MRMEDKARRRDLVVDEDTLFSFYDQRLPESITTARHFDSWWKKEQPKNPDALNFDPAKLL
AEGANEFAEEQFPDVWRQGSLEFELTYQFEPGNKYDGVTVRIPVPLLAGASVEGFDWLVP
GLRLELVTELIRSLPKALRRTVIPAPDFAARAVPLLKPHFGSLREQLAEVLRGFGAVGIN
ASDFDATKLSPHLRVTFAAIDKRGKIVDSDKELAALKSRSSGKIRASVNKAVQRGKQVVA
PAATWTFETQGDIATEVVTRVDGQDIVAYPALVVTNDGVSVHAMPTQAEADAAMLTSTLT
LLLRELPTPGKNMANGLPLKQRVAVEHYPHGGLPGLITDAKVAAVRDLLIAAGGPVRTPA
AFTQLTESIKPAVAGAVRQMVVSLAPALVDYLDIRSDLDGWSGDAIDDMQAQLEFLLPPH
ALSVHGSARLRHLPRYLKAMRIRLDAMDRDPDRDADLQDEVSACEVLLEARLKQLPIGRD
KTTAVKDVRWMLQELRVSLFAQQLGTAHPVSARRIEKAIAKLR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaataccccgcattctcccgcacccgcgccctccaagcgagacttgtacgcgcgcctt
gacgacgtctctttggccgctgcccactcgttccggcggcgcctcgccaaggcgcgatca
ccgcgcgccttggtcgccattggccaagacatcgccgaggcagaagcactgctggcgcta
cggcgagagtcacttcctgacgtgacctatccggagtctttgcccgtcagtgcacgtcgc
gaagacatcatggctgctattcgcgacaaccaagtggtgatcattgccggcgagaccggc
tcgggtaaaaccacacagattcctaaaatgtgtctggatcttgggcgcggtgtgcgggga
ttgatcggacacacccagccacgtcgtttggcggcacgttcggtggcagaacgaatttcc
gacgagcttggccagcagatcggtgacagtgtcggctatgcgatccgcttcgatgaccgc
gtttccgaaagcacgaccatcaagctgatgaccgacggcattttgctcgctgagttgcag
cgagaccgcctattgcgggcttatgacacgatcatcatcgacgaagcccatgagcgttcc
ctcaacattgacttcctactgggctacctcaagaatctgcttccgaaacggccagatctc
aagatcattatcacttccgcgaccatcgatccggagcgattcgcagagcatttttgcacc
gcggacggcactccggcgccgatcatcgaggtatccgggcgtacgtatccggtagaaatt
cgttaccgcccgctcgagattgagcacgaagacaaaatcatcgacattgatccactcgat
ggcctggttcacgctttagaagagctcatggccgagggcgacggcgatatcctgtgcttc
ttctctggcgaacgcgatattcgcgatgccatggaggtgattgataaacgtcgattcaaa
aacattgaggttgtcccgctgttcggacgactgtcgaatgaggaacaacaccgagtcttt
gcaccacatgccaagcgccgaattgtcttggctaccaacatcgccgagacgtcactgact
gtgcctggtattcactacgtcattgacactggtttggcccgaatttcccgctattcgacg
cgcactaaagtccagcgcctgcccatcgagcccatttcccaagccagcgccaaccagcgt
tcgggtcgttgcggtcgcgtagcggacggtatcgccatccgtttgtactcggagcaggac
ttcgattcccgcccagagtttaccgatccagaaattctgcgcaccaacttagcgagcgtc
atcctccagatggcatcgctaggtctgggtgacatcgcagagttccctttcctgcaagca
cctgattccaaggcaattcgggacggcctcctgctgcttcacgaacttggagcgatttca
caaaaagagaataagggtgcgccccagctgagccctattggccggacgatttcccgtatc
ccggttgacccccgcctagcccgcatgctggtggaagccgaccgcaatggttgcctcgac
ttcgttatcatcatcgtggctgcactgaccattcaggatgtgcgcgagcgtccgcttgat
caccaagcacaggcagaccaactccatgcccgattcaaggacacttctagcgatttcctg
agctatctcaagctgtgggagtacttaatggagcaatcccgcgaattgtctggaaacgcc
ttccgcaagttggtcaagagggaattcctgcactatttgcgtattagagaatggcaggac
ctcgtccgtcagctgcgaggcattgttaaggaattagggtggaaaacagaaaccactccc
ctgagcgccgatgcgctgcaccaatcactgctggctggtcttctgtctcacatcggacaa
cgcgagagcgactctaaggagtttcacggcgcacgtggcactcgattcatgatcttccct
ggctccgctcttgcgaaaaagccccctcagttcatcatggctgcggaactcgtcgatacc
tcgaggctgtgggcccgggatgtcgccgctattgaccccaactggttagagcaactcgcc
ggtgacctgctacgccaccagcattccgaaccgcactggtcttccaagcggggcgcagca
atggtgtaccagaagtcgacgctgtttggcgtgacggtggtcgtcgataagctagtgccc
tatcacaaggttgatccagtttcggcacgtgagatgttcatccgcagcgcgcttatcgac
ggccaatggaacactcaccatcagtttttccatgacaatgttgccaagctcgacgatgtc
atgcgaatggaagataaggcgcgtcgacgcgacttagtagtcgatgaggacaccctattc
tcgttttacgaccagcgtctaccagagtccatcaccactgcgcgccacttcgattcttgg
tggaagaaggaacaacccaagaacccggacgcattgaacttcgatcccgccaagctcttg
gcggagggtgccaatgagtttgccgaggaacagtttcccgacgtgtggcggcaggggtcg
cttgagttcgaactgacgtatcaattcgaacccggaaacaagtatgacggcgtcacagtg
cgcattccggttccattgctagccggggcatcagtggaagggttcgattggctggttccg
ggtttgcgattggagcttgtcactgaactgattcgcagtttacctaaggcgttgcgacga
actgttattccagctccagatttcgccgcgcgagctgttcccttgttgaagccacatttt
ggctcgttacgcgaacagctagcggaggtacttcgtggcttcggtgcagttggaatcaat
gcctctgacttcgatgctacgaagttgtcaccacacctccgggtcacattcgctgcgatc
gataagcgcgggaagattgtagattcggacaaggaactagcagcactgaaaagccgtagc
tctgggaagatccgagcctcagttaacaaagctgttcaacggggcaaacaagttgtcgcg
cctgcagcaacgtggaccttcgagactcaaggtgatattgcaaccgaagttgtgacgagg
gtagatggccaagacatcgtagcctacccagccctagttgtgacaaacgacggcgtgtcc
gtccatgcaatgcctacccaggcggaagctgacgccgctatgttgacctcgaccttgact
cttctgcttagagaactgccaactccaggaaagaacatggctaacggactgccgttgaag
cagcgcgttgccgtagagcattacccacacggcggcctcccagggctgatcactgatgca
aaggtggcggcagtacgtgacttgctcatcgctgccggcggaccagtgcgaacgccagct
gccttcacgcaactgaccgaaagcatcaaacctgctgtagctggcgcggtacggcagatg
gtcgtctccctcgcaccagcgctagtggactacctggacatacgctccgacttagacggc
tggtccggcgatgcgattgatgacatgcaggctcagctcgagtttcttttgccaccgcat
gcgttaagtgtgcatggcagtgcacgtcttcgtcacctacctcgatacctcaaggccatg
agaattcggttggatgcgatggatcgagatcccgatcgggatgctgatttgcaagacgaa
gtctcagcgtgcgaagtactgctggaagctcgattgaagcagctaccgatcgggcgagac
aaaaccacagcagtgaaagacgtcagatggatgctgcaggaattaagagttagcctgttt
gcccaacagcttggtaccgcgcacccggtgtcagctcgacgaattgagaaggcaattgca
aagctccggtga
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