Campylobacter lari RM2100: CLA_0013
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Entry
CLA_0013 CDS
T00858
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cla
Campylobacter lari RM2100
Pathway
cla03410
Base excision repair
cla03430
Mismatch repair
cla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLA_0013 (recJ)
03430 Mismatch repair
CLA_0013 (recJ)
03440 Homologous recombination
CLA_0013 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cla03400
]
CLA_0013 (recJ)
DNA repair and recombination proteins [BR:
cla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLA_0013 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLA_0013 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLA_0013 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACM63381
UniProt:
B9KE96
LinkDB
All DBs
Position
12254..13825
Genome browser
AA seq
523 aa
AA seq
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MLNKAKIKEILHQRFINDTHVKLCDLPMPSCLKDVYKGALRIKEAIEKNQKLAIVGDYDV
DGVISCVILSEFFDDIGYDYVVKIPNRFKDGYGLNEEIINELDGVDLIITVDNGIAAFDA
AELCLQKGIDLIITDHHMPPAILPKAYAIINPKQQDCDFPDIEICGAQVAWYLVAAIKEV
CKINYNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDKF
ELDNISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFK
QCLEQVDENDPVIIVNGQNWHEGVLGIVASRLVKHFNKPAFVFSECEQKAKASVRSVGRI
DILNVIEQAKEFVLSYGGHKGAAGVLVELEKFGVFKSKLYEICQNIPKDDFYNADEVLGS
IDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRKLGKDENHMKLILTQGNKTL
EALFFNFDYEPELGESIDLIASVSKNNFRGLITPQLTIKEILR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaagctaaaataaaagaaattttacaccagcgttttatcaacgatacgcat
gtgaagctttgtgatctacctatgccatcttgcttaaaagatgtctataagggtgctttg
cgtatcaaagaagcgattgagaaaaatcaaaaacttgctattgttggagattatgatgta
gatggggtgatttcttgtgtgattttatctgaattttttgatgatattggttatgattat
gtggtaaaaattccaaatcgttttaaagacggatatggtttaaatgaagaaattatcaat
gaacttgatggggtagatttaatcatcactgtagataatggcatagcagcatttgatgca
gcagagctttgtttacaaaaaggaattgacttaatcatcactgatcatcatatgcctcca
gctattttaccaaaagcttatgcaattattaaccctaaacaacaagattgcgattttcct
gatattgaaatttgtggggctcaagtggcttggtatttagtcgctgcgataaaagaagtg
tgtaagattaattataatatgtgtaaatttatagagcttttatctatcgcgattatcgca
gatatgatggagcttagagatttaaacagagccttagttagaaaaggtatagaatgtatt
aatgactctaaacgagtggcatttaaagcgatcaagcagtattttggtaaggataaattt
gaacttgataatatcagctttttaattgcacctttgattaatagtgcaggtagaatggat
gatgcaattatttcttataaatttttacattctaaaaatatcgatgaggttatgggttat
ttagaacaaatcattacttataataatagccgtaaagatgaagaacgagagctttttaag
cagtgtttagaacaagttgatgaaaatgatcctgtgattattgtcaatgggcaaaattgg
catgagggtgttttgggtatagttgcaagtcgtttggtaaagcattttaacaaacctgcc
tttgttttttcagaatgtgagcaaaaggctaaggctagcgttagaagtgtaggtaggata
gatattttaaatgttatagaacaagctaaagaatttgttttaagctatggtgggcataaa
ggtgcagctggagttttagtagaacttgaaaaatttggtgtttttaaaagtaagctttat
gaaatttgtcaaaatatccctaaagatgatttttacaatgctgatgaggttttgggtagt
attgatccaaatgaagttgattttgaacttttagagatattagaattttttgagcctttt
gggcataaaaatccaaggccgtattttaaatttgataagctttttgtaaaaaataaaaga
aagctaggtaaagatgaaaatcatatgaagcttattttaactcaaggaaataaaacttta
gaagctttattttttaattttgactatgagccagagcttggagaaagcattgatcttata
gctagtgtttctaaaaataattttagaggattaatcaccccgcaacttactataaaagaa
attcttagataa
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