Campylobacter lari RM2100: CLA_0949
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Entry
CLA_0949 CDS
T00858
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cla
Campylobacter lari RM2100
Pathway
cla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLA_0949 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cla03019
]
CLA_0949 (rnr)
03016 Transfer RNA biogenesis [BR:
cla03016
]
CLA_0949 (rnr)
Enzymes [BR:
cla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CLA_0949 (rnr)
Messenger RNA biogenesis [BR:
cla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLA_0949 (rnr)
Transfer RNA biogenesis [BR:
cla03016
]
Prokaryotic type
tRNA degradation factors
CLA_0949 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ACM64273
UniProt:
B9KCI4
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All DBs
Position
909031..910971
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AA seq
646 aa
AA seq
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MKELFNQLSYGLNANEITNKNKQIIRELLTCDIIKFYKNKYYLKDGFTFGKIDISANGTG
FLESFDPAFKRDLLIENKNLKGANYADIVVAKLLPLKKKRPSAKVILILKRAHETSLVIT
KKYGEAVLGVNIQTGLTCALKASQKSLKTLPLGTILKIENHDNNITEVIGHIDDDFVDEK
ISLALYNKNSIFDTLCENEAKAYGDKVDVSMYPSRKDLRNLNFCTIDPIDAKDFDDAIFY
DKNEHVIYVAIADVSAYVHAYSAIDKEARSRGFSIYFPHIAIPMLPRALSENICSLKPNE
DRLAFCFKISLDQNNEVIKEELFEAIINSKRRFNYDEVDEYLQTQEDLGAINWLYEVFKI
TQNLRKKRLKNACEFKTQELRMTLDENNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI
DIGVFRNHLSPDYKKIDQLLADLSTLSIDINPKNNVIELFKDIQVLANELNIREEVDKLI
IKAQKKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINHDEKMFNYLLLN
IQSTCEELSLLEREADKVSWNFMDRKFARWAKENIGKRFKAIVIENQSSLQVKLDDDIKG
ALINIIGSRANLLENVEVEITEVDIVSAKIFGKITKHFSLERNQNV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattatttaatcaactaagttatggtctaaatgctaatgaaattaccaataaa
aacaagcaaataattagagaattattaacttgtgatattattaaattttataaaaacaaa
tactatttaaaagatggctttacttttggtaagattgatatttcagctaatggaacggga
tttttagaaagttttgatcctgcttttaagcgtgatttgctcatagaaaataaaaattta
aaaggagcaaattatgctgatatagttgtggcaaaattacttcctcttaaaaaaaagcgt
ccaagtgctaaagttatcttaatacttaaaagagcccatgaaacttctttggttataact
aaaaaatacggcgaagcagtccttggagtaaatattcaaacaggacttacatgtgcctta
aaagcctctcaaaaatccttaaaaacactgcctttaggaactattttaaaaatagaaaat
catgataataatatcactgaagtgatagggcatattgatgatgattttgtagatgagaaa
atttctcttgctttatataataaaaactctatttttgataccttgtgtgaaaatgaagca
aaagcttatggagataaggttgatgtgagtatgtatccatcaagaaaagatcttagaaat
ttaaatttttgcactattgatccaattgatgcaaaagattttgatgatgcgatattttat
gataaaaacgaacacgtaatttacgtagccatagctgatgtaagtgcttatgtgcatgct
tatagtgctattgataaagaagcaagatctaggggattttctatttattttcctcatatt
gccatacctatgttgccaagagctttgagtgaaaatatttgctcactaaagcccaatgaa
gataggttagcattttgttttaaaataagcttagatcaaaataatgaagtgattaaagaa
gagctttttgaggctattattaactcaaaacgccgttttaattacgatgaagttgatgag
tatttacaaacacaagaagatttaggtgcgattaattggctttatgaagtttttaaaatc
actcaaaatttacgaaaaaaacgattaaaaaatgcttgtgagtttaaaacccaagagcta
agaatgactttagatgaaaataataaactcataaaaacacgccttgaaaatgacacagcc
tcgcataatttaatcgaagattgcatgcttttagctaataaagctgcagcaaaactcatt
gatataggagtttttaggaatcatttaagtcctgattataaaaaaatagatcaattatta
gccgatctttcaacgcttagtatagatattaatcctaaaaataatgtcatagaattattt
aaagacattcaagtcttagcaaatgagctaaatataagagaagaagtagataaactcatc
atcaaggcacaaaaaaaggcagaatattctagtgaaaatgcaggacattttggcttgggt
tttgacaaatacactcattttacaagccctattagaaggtattctgatcttattttacat
agacttttaaaggctaaaattaatcatgatgaaaaaatgtttaattatttgcttttaaat
attcaaagcacttgtgaggaattaagcttattagaaagagaagcagataaagtctcgtgg
aattttatggatagaaaatttgcaagatgggcaaaggaaaatataggaaaaagatttaaa
gctatagtcattgaaaatcaaagctcattgcaagttaaacttgatgatgatattaaggga
gctttaattaacatcattggctcaagggcaaatttattagaaaatgtagaagtagaaatc
actgaagtggatattgttagtgccaaaatttttggaaaaatcaccaagcattttagctta
gaaagaaatcaaaatgtataa
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