Campylobacter lari RM2100: CLA_1039
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Entry
CLA_1039 CDS
T00858
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cla
Campylobacter lari RM2100
Pathway
cla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLA_1039 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cla03400
]
CLA_1039 (mfd)
Enzymes [BR:
cla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLA_1039 (mfd)
DNA repair and recombination proteins [BR:
cla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLA_1039 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ACM64361
UniProt:
B9KCS2
LinkDB
All DBs
Position
complement(992437..995376)
Genome browser
AA seq
979 aa
AA seq
DB search
MQAKLYEYLLSNKAELIVCENDKEADELAQVCLFLNLKTFVLPDFRAEFGSDLRSFSKEL
FEICKVLNAYHKEDENKILISPIKTILQKLPGKKHLKNIILKRNSLLALEKFKEEILHSG
YEFVDIVQDKGEISIRGDIIDIFAINEEQPFRILLFSDEIESIRYFDIHTQKSIPNELSK
IEICPFLNAFNQEEYENLQEKIQNFQSQSIINDVNSLGFWCIDDFCDYSDLNFVSIKKFD
INDFEEDISKINQNILPEPRFYKDLVSSYNHDFFTFHKDKKITILIKNEALFKALNLQEF
SNIKLKISQERINLIAQDELVISLNKKEKSKRIRKASLVIDELRVGDFVVHEDYGIAKFL
GLEIIIIAGAKKEFVALGYLNNDKLLLPVENLYMIDKYIGASGGVPLLDKLGKGSFLKIK
ERLKEKLFAIASNIVSLAAARALIKAKELKISQELQDEFINKAGFFYTKDQSQVCQEITQ
DLKSSQVMDRLLSGDVGFGKTEIAMNAIFTCVKSGYTALFFVPTTLLSAQHFKTLKKRFD
PFNIEVFKLDRFTSAKEKKQILAFLKENKPCVVVGTHSLLGVECENLGLVVIDEEHKFGV
KQKEKLKELSKNSHILSMSATPIPRSLNQALSSLKSYSILQTPPEDRLDVRTFVRESNDA
LIKEAISRELRRAGQIFYIHNHIASIDGCKKYLLDLFPNLKILILHSKIDAKTTEEQMLK
FENKEYDLLLCTSIVESGIDLANANTIIVENSDRFGMADLHQLRGRVGRSFQQGYCYFLI
EDKEKITKDSLKRLTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKKEEIKEKKIDLKLNINAFLNSEYISEDRLRLELYRRLSKCMSVNEVYE
IESEMNDRFGKPDIFTKQFLDLIIIKILASKHYKLVSNYEQNICFVKDDDSKEVIKAKSK
DDDDVIEAVLMHLRKSEKV
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaaattatatgaatatttattaagtaacaaagctgagttaatagtttgtgag
aatgataaagaagcagatgaattagcccaggtttgtctgtttttaaatttaaaaactttc
gttttgcctgattttagagcagaatttggcagtgacttgcgctctttttctaaagagctt
tttgaaatttgtaaagttttaaatgcttatcataaagaagatgaaaataaaattttaatt
tctcctataaaaacaattttgcaaaaactccctggaaaaaagcatctaaaaaatattatt
cttaaaagaaattcacttcttgctttagagaaatttaaagaagaaattttacatagtggg
tatgaatttgttgatatagttcaagataagggtgagatttcaatacgcggggatattata
gatatttttgcaattaatgaagagcaaccttttagaattttgcttttttcagatgagata
gaaagcataagatattttgatattcatacacaaaaatcaatcccaaatgaactttcaaaa
attgagatttgtccatttttaaatgcttttaatcaagaagaatatgaaaatctacaagaa
aaaattcaaaattttcaaagtcaaagcattatcaatgatgttaattctttaggtttttgg
tgtattgatgatttttgtgattattcagatttaaatttcgtaagcataaaaaaatttgat
ataaatgattttgaagaagatattagcaaaattaatcaaaatattttacctgaaccaaga
ttttataaagatttagtaagttcttacaatcatgattttttcacttttcataaagataaa
aaaattactattttgataaaaaatgaagctttgtttaaagctttaaatttacaagaattt
tcaaatattaaattaaaaatatctcaagaaagaatcaatctaatcgctcaagatgagctt
gttatttctttaaataaaaaagaaaaaagtaaaagaattagaaaggcaagtttggtaata
gatgagcttagagtcggggattttgttgtacatgaagattatggtatagctaaattttta
ggtcttgagattattataattgcaggagcaaaaaaagaatttgtagctcttgggtattta
aataatgataagcttttattgcctgttgaaaatttgtatatgattgataaatatatcggc
gcaagtggtggtgtgcctttgcttgataagcttggaaaaggaagttttctaaaaatcaaa
gaaagattaaaagaaaaattatttgccattgcttcaaatatagtttctttagcagcagct
agagctttgataaaagcaaaagaattaaaaatttctcaagaattacaagatgaatttatc
aataaggcgggatttttttacactaaagatcaaagtcaagtttgtcaagaaatcactcaa
gatttaaaaagttctcaagtaatggataggcttttaagtggtgatgtgggctttggtaaa
actgaaattgcaatgaatgctatatttacttgtgtaaaaagtggctatacggctttgttt
tttgtgccaactactttactttcagcccagcattttaaaaccttaaaaaaaagatttgat
ccatttaatatagaagtttttaagctcgatcgctttactagtgccaaagaaaaaaaacaa
attttggcatttttaaaagaaaataagccttgtgtagtggttggaacgcattctctttta
ggggttgagtgtgaaaatttaggtttagttgtgatagatgaggagcataaatttggtgta
aaacaaaaagaaaaactcaaagaattaagtaaaaactcccatattttatctatgtcagca
acgcctataccaagaagcttaaatcaagcccttagttctttaaaatcatacagcatctta
caaactccacctgaggatcgtttagatgtaagaacttttgtaagagaaagtaatgatgct
ttgattaaagaagctatttctagagaattaagaagagcaggacaaattttttatatacac
aatcatatagcaagtattgatgggtgtaaaaaataccttttagatttatttccgaattta
aaaattttgattttacattcaaaaattgatgcaaaaactacagaagagcaaatgctgaaa
tttgaaaataaagaatatgatttgttactttgtacttctatagttgaaagtggtattgat
cttgcaaatgcaaatactatcatagtagaaaattcagatcgttttggtatggctgattta
catcaacttagaggacgagtggggcgtagctttcagcaaggatattgttattttttaatt
gaagataaagaaaaaatcacaaaagattctctaaaaagacttacaagtttagaaagcaat
tcttatttgggttcaggaagcgtgcttgcttatcatgatttagaaattcgtgggggtgga
aatttattaggtgtggatcaaagtgggcatatagagcaaattggctatagcttgtatctt
aaaatgcttgaagatgagattaataaattaagcaaaaaagaagaaattaaagagaaaaaa
atagatttaaaattaaatattaatgcttttttaaatagtgaatatattagcgaggatcgc
ttgaggttagagctttatagaagacttagtaaatgcatgagcgtaaatgaagtatatgaa
atagaaagtgagatgaatgatcgctttggcaagcctgatattttcactaagcaattttta
gacctaattatcataaaaattttagctagcaagcattataaactagtgagcaattatgag
caaaatatttgttttgtaaaagatgatgatagtaaagaagttataaaagcaaaaagtaaa
gatgatgatgatgtgattgaggctgtgttgatgcatttaagaaagagtgaaaaagtatga
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