Chryseobacterium lactis: EG342_02220
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Entry
EG342_02220 CDS
T06580
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EG342_02220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clac03021
]
EG342_02220 (rpoC)
03400 DNA repair and recombination proteins [BR:
clac03400
]
EG342_02220 (rpoC)
Enzymes [BR:
clac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EG342_02220 (rpoC)
Transcription machinery [BR:
clac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EG342_02220 (rpoC)
DNA repair and recombination proteins [BR:
clac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EG342_02220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AZA80804
UniProt:
A0A3G6RVA0
LinkDB
All DBs
Position
complement(499027..503292)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPIKEDGEIVTRLIETSVGRILFNQIVPKQ
SGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIATSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPESDELIASADQVIIEELAKKIEAAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDESGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILAVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVEAGDSKEFRPGQMITARELRDE
NSKLRREDQSLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDALGGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtagatttaataaaataaccatcggtttagcttcaccc
gagtctattttacaggactcaagaggggaggttttaaagccggaaactattaactacaga
actcacaagcctgaaagagacgggctattctgtgagaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatataagagaattcgttataaagggattgtttgtgaccgt
tgtggagtagaagttactgagaaaaaagtaagaagagagagaatcgggcacatcaacctt
gtagttccaattgcacacatctggtatttccgttcattaccaaacaaaatcggatacctt
cttggaattccttctaagaaattagatatgatcatctactacgaaagatacgtagtgatt
caacaaggtattgctaagaaattagacggttctgatttcgaaaatatggaattccttaca
gaagaagagtaccttgatatcatggaaactcttcctgtagaaaaccaatatcttgacgat
tctgatccaaacaaattcatcgccagaatgggtgctgaagctgttgaagatctattaaaa
agaatcgatcttgatgcattgtctttcgacttaagacataaagctcacaacgaaggttct
aagcaaagaagaactgaagctctgaaaagattgaacgttgtagaagcattgagaggtgct
aatacaagaatgatcaacagaccggagtggatgattatgcgtgtacttcctgttatccca
ccagaactaagaccattggttccattggatggaggacgtttcgcaacttctgacttaaat
gacctttatagaagagttattatcagaaataaccgtttgaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttactaggaaaaagg
gttgactactctgcgcgttcggtaattgttgtaggtccaaacttacagcttcacgaatgt
ggtattcctaaagatatggcagctgaactttacaaaccgtttatcattagaaaactaatc
gagagaggaattgtaaaaacagtaaaatctgcgaagagaattattgatagaaaagaaccg
gtagtttatgatatcttagaaaacgtgatgaaaggtcaccctgttctattgaacagagca
cctacgcttcacagactaggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccaattacacccgttagtaacaacagcattcaacgccgatttcgatggtgaccagatg
gcggtacacttaccgttaggaccagaagcgatccttgaagctcagttattgatgttaggt
tctcaaaacatcttgaaccctgcaaacggttctccaattacagtaccatctcaggacatg
gttcttggtctttatttcatgactaaagaattgagctctacagaagatatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaatcgcttatgcagaaggtaga
gtatctttaaatgctaaagtaagatgtagacttcctattaaagaagacggagaaatcgta
acaagattgatcgaaacttctgttggtagaatcttattcaaccagattgtacctaagcag
tcaggatatatcaatgaacttctgactaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacggatttccctacaactgtgaagttccttgatgcaatgaaagatctagga
tattcaaatgcattcaaaggaggtctgtcattctcattaggggatatcgtagttcctgtt
gagaaaaagcaaatgattgctacttcaattgaaactgtagacgaaattagagctaactat
aacatgggtctaattaccgatacagaacgttataaccaggtaatcgacgtttggacaaac
accaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtgggttc
aactctgtatacatgatgcttgactctggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcgaaaccgcaaaaagccggttctaccggagcggag
atcatcgaaaacccgatccttgcaaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgctcgtaagggtcttgcggataccgctcttaagacagccgatgct
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagatgac
tgtggaacattaagaggtactgaagttactgcacttaagaaaaatgacgagatcgttgaa
agaatctctgaaagaatcttaggtagagtttctcttcataatatctatgaccctgaatct
gacgagttaatcgctagtgcagaccaggtgatcatcgaagaattggctaagaaaattgaa
gcagcaggtttagaagctgttgaggttcgttcaccattaacttgtgaagctaagaaaggg
atctgtgcgaaatgctacggtagaaacttagcaacaggtaaagtaatccacatgggtgaa
gcggtaggtgtaattgcagcacagtcaattggggagccgggaactcagcttacgttgaga
actttccaccaagggggtactgcaggaaacgtatcagaaaacccatcgattgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaagcggt
aatacagctgaagttgtagtttcacgttcaacagaattcagattagttgctgataacgag
tcaagaactccgttaatggtagctaacgtaccttatggatctatattagctgtaaaacca
ggtgataaagtgaaaaaaggtgatacaatctgtagatgggatccatataacgcggttatc
attgctgaaacttcaggtaaggtagaatacgaggatattatccagggtatttcattccaa
cttgaaattgacgaacaaacaggattcgaagagaaagtaatctctgaatctagaaataag
aaagccgtacctaccttgaaggtggtagattctaaaggagttgagcagaaagcttacaac
ttaccggtaggagcccacttaatggtaaacgatggtgaaaaaattaaggctggtaaagtc
ttaatcaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaactattcgaagcaagaaacccttcaaacccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaacttattgttgaggctaaa
actggagaaagaaaaatttatttagttaaattatccaaccagatcttagtacaggagaat
gacttcgtaagagcaggttctccactttctgacggttctatcacaccggaagatattcta
agaattaaaggcccaactgccgttcaggaatacttagtaaacgaaattcaggaagtttac
cgtctacaaggggtaaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgttgatggaggtgatactcaattccttgaaggagctcttgaacat
aagtatgacttcctagaagaaaacaatagagtattcggtcttaaagtagtagtagaagct
ggtgattctaaagaattcagaccaggtcagatgattactgcaagagaattaagagatgag
aactctaagttgagacgtgaagatcaaagcttggtagaagtaagagaagctcttcctgct
acagcaactcctgtattacaaggtattacaagagcagcccttcaaacgaaatcgttcatg
tctgcagcatcattccaggaaacaactaaagttcttaacgaggcagcagttgctggtaaa
gttgacgctcttggtggtcttaaagaaaatgtaattgtaggtcacagaattcctgcaggt
acaggtcttaaagaatatcagaatgttatcgtaggttctaagaaagaattcgaagacctt
aactaa
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