Chryseobacterium lactis: EG342_04140
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Entry
EG342_04140 CDS
T06580
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
clac
Chryseobacterium lactis
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clac03016
]
EG342_04140
Enzymes [BR:
clac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EG342_04140
Transfer RNA biogenesis [BR:
clac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EG342_04140
Prokaryotic type
tRNA splicing ligases
EG342_04140
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZA81143
UniProt:
A0A3G6RW65
LinkDB
All DBs
Position
complement(960274..961665)
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSINVALEVMKRNFATKNIHHVKSILKEILVNPENFEKDLT
FGQIAETLLSSKKTEKRMLNSQRASFQIFGNNISEEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLNGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDLIPILRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVATEQCPLPREAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPAHE
NELGMIPGSMTEKGFIVRGKGNPDSLKSASHGAGRAHSRGECRSLFTQNDIKKELKLKNV
TLMGGNTEEAPMAYKNIHEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccgaataatcaa
agcatcaatgtggcgcttgaagtcatgaaaaggaactttgccaccaaaaatatccatcac
gtaaaatctattttaaaagaaatcctggtcaatccggaaaactttgaaaaagacttaacc
ttcgggcagatcgcagaaactttgctttcttcaaaaaagacagaaaaaagaatgctgaat
tcacagcgtgcctcttttcagatctttggaaataacatttctgaagaagcaaaaaaccaa
ctgtacaccgcattgaaattgccaatttcaacacaaggcgctttaatgcctgatgcccac
agtggttatggccttccgatcggaggcgtactcgccgtagaaaatgcagtcattccttat
ggagtaggcatggatatcggctgcaggatgagcctcagtattttggatacccccgtttca
tatctgaacggtgcaagagataaatatgaaaaagctcttgcagaacacacaaaattcgga
atgtatgagactcacaaatctcacatagaccatgaaatcttcgacagagatacctttgac
ctcattccgattttaagaagattaaaaggaaaagccattaaacaaatgggatcttccggc
ggaggaaaccacttcgtagaattcggagaagtagaaatcaccgaagaagacgagcagata
ggattaccaaaaggaaaatatctgggaatcctttctcacagcggatccagaggattggga
gcagagattgcccagtattattccagagtagccacagaacaatgtccgctaccaagagag
gcccaacagtttgcatggcttgacctgagtacacacctcggtttggaatattggactgcc
atgaacctcgccggagactatgcttcagcatgtcacgatgacatccacagaagattggta
aaagccgtaggaggcagggtgaaagccagaattgagaaccatcacaacttcgcctggaag
gaaattcacaacggaaaagaagtgattgttcacagaaaaggagcaaccccggcccatgaa
aatgaattgggaatgatcccgggttcaatgaccgaaaaaggatttattgttcgtgggaaa
ggaaatcccgattctctgaaatcggcgtcgcatggcgcaggaagagcacattccagagga
gaatgcagaagcctttttactcagaatgatatcaaaaaagaactgaagctgaagaatgtg
acattgatgggtggaaatacagaagaagcaccaatggcctataaaaacattcatgaagtg
atgaatgcacaaagcgaactggtcgacattctgggaacatttcaaccgagaatcgtgaga
atggatcggtaa
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