Chryseobacterium lactis: EG342_12490
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Entry
EG342_12490 CDS
T06580
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG342_12490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clac03019
]
EG342_12490
03009 Ribosome biogenesis [BR:
clac03009
]
EG342_12490
Enzymes [BR:
clac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG342_12490
Messenger RNA biogenesis [BR:
clac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG342_12490
Ribosome biogenesis [BR:
clac03009
]
Prokaryotic type
rRNA helicases
EG342_12490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZA82645
UniProt:
A0A3G6RJ82
LinkDB
All DBs
Position
2787112..2788815
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AA seq
567 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKST
TKIDIIEKFIPTGEDIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSKFTKEELVHQLLQ
FQLKDLALYYKDKNDLAEQKLSSRDDDFSRRDRGRDSRDRDRGRDRDRGDRGRDRDRGGK
PRRKDENMVRFFFNLGKKDQLKKLDVLDIINKATAVGKGKKRAEIGDIEILEKFSFFEVE
KSFKDNVLSSIQSMKFKGKDMRAEVAN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggctacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaggacataaagaattactctaagtacatgaaagac
atcaaaactactgcggtttatggtggaagtagtattgtagagcagatgagatctttgaag
gataaaccgcaaattattgtgggaactccgggaagagtaattgatcttatcaacagaaaa
gcacttgacttttctgcgattcattggttagtattagacgaagctgatgaaatgctttca
atgggattcaaagacgaattggaaaccattctaagcgaaactccggaaacaaaacaaact
ttcttattctcggcaacgatgaacaaggaggtggaaagaatttccaaaaattaccttact
aagccacatcgtatttcagtaggttctatcaacgaagtgaagaagaacattactcacgaa
tactatgtagtagggtatcgtcagaaaaaagaagcattgaaaagattaatcgatgccaac
cctaaccagtattccattattttctgtagaacaagaatggaaactcaggaggttgccgat
ttcttgatgcagaacggttatgccgctgatgcacttcacggagacctttctcaggcacag
agagatacggtaatgaagaaattcagattgaaaaacattgatattcttgtagcgacagac
gtggcagcaagaggattggatgtaaactctctgactcacgttattcacttctctttacct
gatgatcctgaagtattcgtacacagaagcggaagaacaggtagagctggaaaagacggt
atttctatggctttaatcaagcctgaagaaagcagaaagctgaagcagattaagtctacg
acaaaaattgacattatcgaaaaattcattcctacaggtgaagatattatcaaagctcag
gtaggaggtgtattcgaaaaattattgacggagcacgaagatcttttcgaatttgatgat
agtttaattccagatctaagcaaatttaccaaagaagaattggtgcaccagttgctccag
ttccaattgaaagatcttgctctttattacaaagataaaaatgatcttgctgaacagaaa
ctgagcagcagagatgatgatttctccagaagagatcgtgggcgtgatagtagagacaga
gatcgcggacgtgacagagacagaggagatcgtggaagagatagagatcgtggtggaaag
ccaagaagaaaagatgagaatatggtaagattcttctttaatcttggaaagaaagatcaa
ttgaaaaagcttgatgttttggatattatcaataaggcaactgctgttggaaaaggcaaa
aaaagagctgaaatcggtgatattgaaattctagagaaattctctttcttcgaagttgaa
aaatcgtttaaagacaatgtcttgagcagtattcaatcgatgaaatttaaaggaaaagat
atgagagctgaagtagctaactaa
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