Chryseobacterium lactis: EG342_12525
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Entry
EG342_12525 CDS
T06580
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG342_12525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clac03019
]
EG342_12525
Enzymes [BR:
clac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG342_12525
Messenger RNA biogenesis [BR:
clac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG342_12525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UvrD-helicase
Cas3-like_C_2
P-loop_SecA
HEM4
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
AZA82652
UniProt:
A0A3G6RLU3
LinkDB
All DBs
Position
complement(2794225..2795529)
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AA seq
434 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTNPTPIQERSIPDILQGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGSQEAALR
KGVDILVATPGRLLDFIAQGIISLRNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT
LFFSATMPAEIQKLANSILNNPVKVEVTPVSSTAETIKQSVYFVEKDNKLNLLSHILQND
ISDSVLVFSRTKHGADKIARKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGSEGSSISFVDGLDLLNLKNTEKL
IGKKIPIVKDHPFHTDDLVAQKRDSNNKPMGAGSEKPRSSNNSRPNQNNKTKPSGATPSV
GFKKPKNKNFTRKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgctaaggcaatccaggaacaagga
tatactaatcccacccctatccaggaaagatctattcctgatattttacaaggcagagac
tttttaggctgtgcccaaaccggaaccggcaaaacagcagccttttccattcctattcta
cagaacttatctaaaaataaaattccaaataagcatataaaagctttaatccttacgcca
acgagagaattggctattcagattgaagaaaatattaatgcatacggaaaatatcttccc
ctaaaacaacttgttatttttggaggagtaaaacaaggaagccaggaagctgcccttaga
aaaggagttgacattctagtcgctactcccggaagacttcttgactttatcgctcaggga
attatcagtcttaggaatcttgaaatatttgtccttgatgaagcagacagaatgcttgat
atgggctttgtacatgatgttaaaagagttattaagcttttaccacaaagaagacagact
ttattcttttcggcgacaatgccggcggaaatccagaagctggctaattccattctgaat
aatcctgtaaaagtggaagtgacacctgtttcttctactgcagagaccatcaaacaatcg
gtttatttcgtagaaaaagataataaactgaacctgctttctcatatccttcaaaacgat
atctcagattcagtattggtgttctcaagaacaaagcatggtgcggataaaattgcaaga
aagcttcagaaagacaatatttctgcagaagcaattcatggaaataaatctcagaacgca
agacagaatgctttgaataatttcaaatcaggaaaaacaagagtattggtagctaccgat
attgcagcaagaggtattgatattgatgaattaaagttcgtgatcaactttgaattatct
gatgtttctgaaacctatgtacaccgaatcggaagaacgggaagagcaggttccgaaggt
tcttcaatctctttcgttgacgggcttgatcttcttaatttaaaaaataccgaaaagctt
atcgggaagaagatccctattgtgaaagatcacccgttccatactgatgatctggttgca
cagaaaagagattctaataataaacctatgggtgcaggttcggaaaagccaagatcctca
aacaattcaaggcctaatcaaaataataagacaaagccatctggagcaactccttcagtt
ggatttaaaaagcctaagaacaagaattttacaagaaaaaaataa
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