Cedecea lapagei: NCTC11466_00293
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Entry
NCTC11466_00293 CDS
T05810
Symbol
csrD
Name
(GenBank) Regulator of CsrB and CsrC decay CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
clap
Cedecea lapagei
Brite
KEGG Orthology (KO) [BR:
clap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clap03019
]
NCTC11466_00293 (csrD)
Messenger RNA biogenesis [BR:
clap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11466_00293 (csrD)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
VEB95195
UniProt:
A0A447UX55
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All DBs
Position
1:282481..284421
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AA seq
646 aa
AA seq
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MRLTTKLTAFITLLTGLAIIATLIGCLLSFYNSVHDKTQQRVLTVATIIDNKLVSRSPQQ
LADHFSELMMPVDITEIRLLANNIWLFQHTLPEGYRPTGTQYTYRTLDVALIKNPGMILK
LTYRDPISVYYRAMFTTTPLTAAVAFMLVVLFLAGRWLKRQLSGQELLEIRAGKIISGER
GAEVRGTVHEWPPLVSSALDTLLSDLQSAGEQRSRVDTLIRAFAAQDIKTGLNNRLFFDN
QLATLLEGQEQVGAHGVVMIIRLPDFELLKDTWGNGPVEEYLFTLVNLFSTFVMRYPGAL
LARYFRSDFAVLLPHRTLKEADGIASQLLNSIDALPPTRMVDRSDMLHIGICAWRSGQTK
EQVMEHAEIATRNAAFQGTNSWSVYDDKLPEQGRGNVKWRTLLEQVLKQGGPRFYQKPAI
DRNGNVLHREIMCRIFDGEQEVLSAEYMPMVRQFGLSEQYDRQVLSRVLPLLSFWPEEML
AIPVTVDSLIRAPFQRWLRDSLMQCEKSKRSRILFELAEADVCQHISRLQHVVRLITALG
ARVVIVQAGLTVVSTTYIKELNVELIKLHPGLVRNIGKRTENQLFVKSLVEACNGTRTRV
FATGVRTRGEWQTLIDNGVAGAQGDFIAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaactcacagcttttatcacccttctgaccgggctggcgattatc
gccacgctcattgggtgcctgttaagcttctacaactcggtccatgacaaaacccagcag
cgcgttctgaccgttgccacgatcattgataataagctggtttcccgttcgccccagcag
ctcgctgaccatttcagcgaactgatgatgccggtagatattacggaaattcgcctgctg
gcgaataacatctggcttttccagcatactttacccgagggctatcgccccacgggaacg
cagtacacctaccgcaccctcgatgttgccctgatcaagaacccggggatgatcctgaag
ctgacctaccgcgatccgatctccgtctactaccgcgccatgtttaccactacgccgctg
actgcggccgttgcttttatgcttgtggtgcttttccttgccgggcgctggctcaagcgc
cagctttccgggcaagagctcctggaaatcagagcgggcaaaattattagcggcgaacgg
ggggcggaagtccgcggtacggtgcatgagtggccgccgctggtgagcagcgcgctggat
accttactgtcggatttgcaaagcgctggcgagcagcgcagccgcgtcgataccctgatc
agggcctttgccgcccaggacattaaaaccgggctaaataatcgcctgttctttgataac
cagctggcaacgctgctggaaggtcaggagcaggtcggcgcccacggcgtggtgatgatt
atccgcctgccggattttgagctgttaaaagacacctggggcaacggtccggtagaagaa
tacttattcactttggtgaacctgttctcaacttttgtgatgcgctatcccggcgccctg
cttgcccgctatttccgcagtgattttgcggttctgctgccgcaccgaacccttaaagaa
gcggacggcattgccagccaactgctgaattctattgatgcgctgccgccgacccgcatg
gtggaccgtagcgatatgttgcacatcggcatttgtgcctggcgaagcgggcagacaaaa
gagcaggtgatggagcacgcggagatcgccacccgtaacgccgcattccaggggacaaac
agctggtcagtttacgatgacaagctgccggagcaggggcgaggcaacgtgaagtggcgt
accttgcttgagcaggtactgaagcagggcggtccgcggttttaccagaaaccggcgatc
gatcggaacggcaacgttctgcaccgcgaaatcatgtgccgcatttttgacggtgaacag
gaagtgctttcggcagagtatatgccgatggtcaggcagttcggcttgtctgaacaatat
gaccgtcaggtgttgtcgcgggttttaccgctgctcagtttctggccggaggaaatgctc
gctattcccgtcaccgttgactcgctgatccgtgcgccattccagcgctggctgcgcgat
tccctgatgcagtgcgaaaaatctaaacgctcacggattctttttgaacttgcggaggca
gatgtatgtcaacacatcagccgtttacaacatgttgttcggttaatcaccgcattaggg
gcaagggtggtgattgtccaggcgggattaacggtggtcagcacaacctatattaaagag
ctgaatgtggagttgattaagctacatccgggtctggtcagaaacatcggcaagcgtacc
gaaaaccagctgtttgttaagagcctggtggaagcctgcaacggtacgcgaacccgtgtt
tttgctacgggagtgaggacccgcggcgaatggcagacgctgattgataacggggtggca
ggggcgcagggtgattttattgccgcatctcagccgcttgacagtaatgtgaaaaaatat
tcacaaagatactcggtttaa
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