Cedecea lapagei: NCTC11466_00372
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Entry
NCTC11466_00372 CDS
T05810
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clap
Cedecea lapagei
Pathway
clap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11466_00372 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clap03019
]
NCTC11466_00372 (deaD)
03009 Ribosome biogenesis [BR:
clap03009
]
NCTC11466_00372 (deaD)
Enzymes [BR:
clap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11466_00372 (deaD)
Messenger RNA biogenesis [BR:
clap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11466_00372 (deaD)
Ribosome biogenesis [BR:
clap03009
]
Prokaryotic type
rRNA helicases
NCTC11466_00372 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
LisH_WDR26
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
VEB95267
UniProt:
A0A447UX38
LinkDB
All DBs
Position
1:361775..363754
Genome browser
AA seq
659 aa
AA seq
DB search
MSYVDWPPSMRHMYYMTDIIETTFSDLGLHASIIQALNDLGYEKPSPIQAECIPHLLNGR
DVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGV
NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRM
GFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSF
WSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALR
EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR
ALLFVENRERRLLRNIERTMKLTIPEVELPNADLLGERRLAKFAAKVQQQLESSDLDQYR
GLLAKIQPSAEEELDIETLAAALLKMAQGERPLILPPDAPMRPRREFKERDDRFERRGDR
NDRGPRGDRPERGGEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFGTHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGRD
GGGRSFGGERREGGRGPRRDGAGAGAGAGRSFSGERREGGRGPRREDGAATARRRFGDA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgtagactggccgccatccatgaggcacatgtactacatgactgatatcatc
gaaaccactttttccgatctggggctgcacgcctccattattcaggcacttaacgacctg
ggctacgaaaagccatcacctattcaggctgagtgtattccacacctgctgaatggccgc
gacgttctgggtatggctcagaccggtagcggtaaaaccgcagcgttctctctgccgctg
ctgaacaacctcgatccagagcttaaagcaccgcaaatcctggtgctggcgccgacccgc
gaactggcggttcaggttgcagaagccatgacggatttctctaaacatatgcacggcgtg
aacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgcgcgctgcgtcag
ggaccacagattgttgttggtactccagggcgtctgcttgaccacctgaaacgcggcacc
ctgaacctctctggcctgaaaggcctggtgctggacgaagcagatgaaatgctgcgtatg
ggcttcatcgaagacgttgaaaccatcatggcgcagatcccggctgaacatcagaccgcg
ctgttctccgcaaccatgccggaagcgattcgtcgtattacccgtcgcttcatgaaagat
cctcaggaagtacgcatccagtccagcgtaaccactcgcccggacatcagccagagcttc
tggtctgtatatggcatgcgtaaaaacgaagcgctggttcgtttcctggaagcagaagat
tttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaagtggctgaagcg
ctggagcgcagcggttataacagcgccgcgctgaacggtgacatgaaccaggcgctgcgt
gagcagaccctggagcgcctgaaagatggtcgtctggacatcctgatcgccaccgacgtt
gcggcccgtggcctggacgttgagcgtatcagcctggtggttaactacgacatcccgatg
gactccgagtcttacgttcaccgtatcggccgtaccggtcgtgctggtcgtgctggccgt
gctctgctgttcgtagagaaccgcgagcgtcgcctgctgcgcaacatcgagcgcaccatg
aagctgaccattccagaagtagagctgccaaatgcggatctgctgggtgaacgccgtctg
gctaaatttgccgctaaagttcagcagcagctggaaagcagcgatctggatcagtaccgt
ggcctgctggcaaaaattcagccttccgctgaagaagagctggatatcgaaacgctggct
gcagccctgctgaaaatggctcagggtgaacgtcctctgatcctgccaccagatgcaccg
atgcgcccacgtcgcgaatttaaagagcgtgacgatcgcttcgaacgtcgtggcgaccgt
aacgaccgtggcccacgtggcgatcgtccggagcgtggtggtgaagatcgtccacgtcgc
gaacgtcgcgatgctggcgatatggaactgtatcgcatcgaagttggccgtgatgatggc
gttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgatatcagcagccgctac
atcggtaacatcaagctgttcgggacccactccaccatcgagctgccgaaaggcatgccg
ggtgaagttctgcagcactttacccgcactcgtattctgaacaagccgatgaatatgcag
ctgctgggtgacgcgcagcctcgtccagagcgcagcggtgaacgccgtggcggtcgtgac
ggcggtggtcgtagcttcggcggcgagcgtcgtgaaggcggtcgtggaccacgtcgcgat
ggtgctggcgctggtgccggtgcaggccgtagctttagcggtgaacgccgtgaaggtggc
cgtggcccgcgccgcgaagacggtgcagcaaccgcacgtcgtcgctttggtgatgcataa
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