Cedecea lapagei: NCTC11466_03181
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Entry
NCTC11466_03181 CDS
T05810
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
clap
Cedecea lapagei
Pathway
clap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11466_03181 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clap03019
]
NCTC11466_03181 (rhlE)
Enzymes [BR:
clap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11466_03181 (rhlE)
Messenger RNA biogenesis [BR:
clap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11466_03181 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
VEB99446
UniProt:
A0A3S4MGW2
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All DBs
Position
1:complement(3225098..3226477)
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AA seq
459 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYREPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QRLTDSAPHLKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDDIKGLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLQKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRMALEGYDVDPSIPAEPIVNGRQQRGGGGRGGQSQGQGQRRGGNGGNASAS
GDRNNGPRRGGKPQGEGAAKPAGDNARRRRPPRKPAAAQ
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcctgaatgccgatattttgcgtgcggtggaagagcagggc
tatcgtgagcctaccccaatccagcgtcaggcaattccggtagtattagcaggccgcgac
ctgatggccagtgcccaaaccggtaccggcaagaccgcagggtttaccctgccgctgtta
cagcgtctgaccgacagcgcgcctcacctgaagggccgtcgcccggtgcgtgcgctgatc
ctcaccccgacccgcgaactggcggcgcagattggtgagaacgtccgcgactacagcaaa
tatttgaatatccgctcgctggttgtttttggcggcgtgagcattaacccgcagatgatg
aagctgcgcggcggcgtagatgtgctggtggcaacgccgggacgtctgctggatcttgag
caccagaacgccgtgaaactcgaccagatcgagatcctggtcctggatgaagccgaccgc
atgctggatatgggctttatccacgatatccgccgcgtgctggccaagctgcctgcgcgt
cgtcagaacctgctgttctcggcaaccttctccgacgacattaaagggctggctgaaaag
ctgctgcataacccggaagaggtggaagtggctcgccgcaacacggcttctgagcaggtc
acgcagcacgttcactttgtggacaaaaaacgcaagcgggaactgctgtcgcagatgatt
ggcgaaggcaactggcagcaggtgctggtgtttacccgcaccaagcacggcgctaaccac
cttgctgagcagctgcaaaaagacggaattaccgcggcggcgatccacggtaataaaagt
cagggcgcccgtacccgtgcgctggccgactttaaaagcggcggcattcgtgtgctggtg
gcgaccgatatcgcggcccgtggtctggatatcgaagagctgcctcacgtcgttaactac
gagctgcctaacgtaccggaagactatgttcaccgtattggtcgtaccggccgtgcggcg
gcaaccggtgaagcgctctctttggtttgcgtcgatgagcataagctgctgcgtgatatc
gagcgtctgctgaagcgtgagatcccacgtatggcgcttgagggatatgatgttgatcct
tctattcctgccgagcctatcgtaaatggtcgccagcagcgcggcggcggcggtcgtggt
ggccaaagccagggccagggtcagcgtcgcggcggcaacggtggtaacgccagcgcttcc
ggcgatcgcaacaacggcccacgccgcggcggtaaaccgcagggcgaaggtgcagcgaag
ccggcaggtgataatgcccgtcgtcgtcgtccacctcgcaaaccggcggctgcgcagtaa
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