Cedecea lapagei: NCTC11466_03782
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Entry
NCTC11466_03782 CDS
T05810
Symbol
ligT
Name
(GenBank) 2'-5'-RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
clap
Cedecea lapagei
Brite
KEGG Orthology (KO) [BR:
clap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clap03016
]
NCTC11466_03782 (ligT)
Enzymes [BR:
clap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
NCTC11466_03782 (ligT)
Transfer RNA biogenesis [BR:
clap03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
NCTC11466_03782 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
VEC00718
UniProt:
A0A447V6H2
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All DBs
Position
1:3782725..3783264
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AA seq
179 aa
AA seq
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MAENRRLFFALTLPSEVQQQIIHWRAAQFPAEAGRPVAAANLHLTLAFLGDVSDEKRQAL
CRLAGRISQPGFTLQLDDAGQWLRSSVVWLGPRQAPRGLLQLANMLRSQAARSGCYQSPQ
PFHPHVTLYRNAIRSVSLPAPGFSWQFRVNEFSLYESLFEQGRTRYQALEHWSLTNKEE
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaatcgccgcctgttttttgccctgacgttaccgtccgaggttcagcagcag
attatccactggcgtgctgcccagttcccggcggaggctggccgaccggtagccgcggcc
aatttgcacctcacgctggcttttttaggggatgtctccgacgaaaagcgtcaggcgcta
tgccgcctcgccggtcgcattagccagcccggttttacccttcagctggatgatgccggg
cagtggctgcgctcaagcgtcgtgtggctggggccgcgccaggctccgcgaggcttacta
cagttagccaacatgttacgttcccaggccgcacgcagcggctgctatcagtctccgcag
ccgtttcatcctcacgttacgctgtaccgcaatgcgattcgttccgtctcgctcccggca
cctggctttagctggcagttccgggtcaatgagttttcactgtatgaatccctctttgag
cagggaagaacccgctatcaggcactggagcactggtcgctgactaataaggaagagtag
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