Clostridium sp. BNL1100: Clo1100_0605
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Entry
Clo1100_0605 CDS
T01708
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
clb
Clostridium sp. BNL1100
Pathway
clb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clo1100_0605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clb03019
]
Clo1100_0605
03400 DNA repair and recombination proteins [BR:
clb03400
]
Clo1100_0605
Enzymes [BR:
clb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clo1100_0605
Messenger RNA biogenesis [BR:
clb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clo1100_0605
DNA repair and recombination proteins [BR:
clb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Clo1100_0605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_22
AAA_30
PhoH
AAA_12
AAA_16
HARE-HTH
Motif
Other DBs
NCBI-ProteinID:
AEY64880
LinkDB
All DBs
Position
664920..669731
Genome browser
AA seq
1603 aa
AA seq
DB search
MKVITFIDTEIEPNSGKILDIGSIKVDGSSFHSNSVSEFKKFIQGSQYVCGHNILYHDLK
YIKNTIIEEDLEDLNFIDTLYLSPLLFPTKPYHALLKDDKLQTEDTNNPLNDSIKARDLF
FDEVTAFHQMDKLLKKIYYSLLKDKKEFGSFFHFLEYNENTIDIENMIREKFNSQICEEA
NLLEIITEYPIELAYSLGLINTKSRYSITPPWVLKNFPAVEKVMFLLRSNPCLRGCSYCD
QALDIHKGLKRFFGFDSYRTYGGEPLQEKAVKAAISNKSLLAVFPTGGGKSITFQVPALM
SGRNLKGLTVVISPLQSLMKDQVDNLEKAGITEAVTINGLLDPIERAKSFERVENGSASI
LYISPESLRSKTIERILLGRNVVRFVIDEAHCFSSWGQDFRVDYLYIGDFIKTLQERKNM
EEGIPVSCFTATAKQKVIEDIREYFKEKLSLDMEIFSSNASRSNLRYKVFQKESEEEKYN
TVRDLIEEKNCPTIVYVSRTRKAYSLAQRLVQDGYQAKPYHGKMDKQEKSENQDAFIRGE
VQIMVATSAFGMGVDKKDVGMVIHYEISDSLENYIQEAGRAGRDESVSADCFVLFNDEDL
SKHFILLNQTKLSIQEIQQVWKAIKDITRFRSRVSQSALEIARKAGWDDNIKEIETRVTT
AIAALEDSGYLKRGQNMPRIYANSILSKNAMEAIAKINNSGRFTEKQKMNATRIIKKLFS
SKSRRHTTDEDGEARIDYISDYLGIVKEEVIQIISLLREEKILADTKDLSAFIKRKESKN
RSLAILKSFRSLEGFLLTILENEEKILHIKELNEQAERSGFNDVTPNRIKTVFNFWAIKN
WIKRQTVEYSKNHIAVLSLQSKEWFEEKLTKRYELAQFIVEYLYDKSITSAATEELNRDE
ILVEFSILELKEEFEGRLLLFNTKVTVDDIEDALFYLSKIEALKIEGGFMVVYNALTIER
LEKDNKKRYKIEDYQKLNQFYQNKVQQIHIVGEYARKMISDYKAALQFVDDYFHLNYISF
LNKYFNGSQQNDIRRNITPAKFKQLFGELSPTQLKIINDNESRYIVVAAGPGSGKTRILV
HKLASLLLMEDVKHEQLLMVTFSRSAATEFKIRLLKLIGNAANFIEIKTFHSYCFDLLGR
VGTLEKSEEVIQETIRRIKSGDVEAGRITKTVLVIDEAQDMDANEFELISALMEYNEEMR
VIAVGDDDQNIYEFRGASSKYLKILINEKNAMLYELVENHRSKSNLVHFSNQFVKRIPNR
LKNTPIIAVQKDMGKIKLVKYRSCNLITPLVNNILREGLVGSTCVLTKMNEEALHIAGLL
VKNGIQAKLIQSNDGFNLYNLLEVRFFLSQLNLYDDIYMISDDVWAGAKRRLIEQFPNNP
NLETCVNLIKDFEAVNPRNKYKSDLEIFIRESKLEDFFSENMEKIFVSTIHKAKGREFDN
VFLMLDRFNIGTDEAVRQLYVAMTRAKRNLTVHYNGNYLDSIKAEGLHIIEDFGEYQPPG
QFAMQLTFRDVWLDFFMSCQNLISELNSGDILAVDEDCCRNSRGQAVLRFSKQFINQIKS
IKQKNYLPKAAKIRFIIYWKKETLDCEIRIILPELYFEREEDL
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcataacttttatagatacagagattgagcctaacagtggtaaaattcttgat
atcggaagtattaaggtcgacggcagctcattccactcaaattcggtatcagaattcaaa
aaattcatacaagggtctcaatatgtttgcggtcataatattctatatcatgacttgaag
tatataaaaaatactattattgaagaagacctagaggacctgaattttatagatacttta
tatttatcccctctgctgtttccgacaaagccttaccacgctttgcttaaggacgataag
ctacagacagaagataccaataatccattgaatgattcaataaaagccagagatcttttt
tttgatgaggttacagcctttcaccaaatggacaagctgctgaagaaaatatattacagc
ttattgaaagacaagaaggagttcgggtctttctttcattttcttgaatacaacgaaaat
actatagatatagaaaatatgattcgtgaaaagtttaattctcaaatatgtgaagaggct
aatcttttagagattattacagaataccccatagaacttgcctatagcttgggacttatt
aatacaaaaagcagatactccatcacaccgccatgggtgcttaagaattttcctgctgtt
gaaaaagtaatgtttttactgagaagcaatccgtgtttgaggggatgctcatattgtgat
caagcgcttgatattcataaaggtctgaagcgcttctttggctttgattcatacagaacc
tacggtggagaaccattacaggagaaagctgtcaaggccgctatttccaataagtctctc
ttggcagtgtttccaactggtggaggaaagtcaattactttccaagtaccggcattaatg
agcggaaggaatttaaaaggtctgactgtagttatttctcctttgcagtcattaatgaaa
gatcaggttgataatctggaaaaagcgggtatcacagaagccgttactataaatggcttg
cttgacccaattgaaagagcaaagtcttttgaaagagtcgaaaacgggtctgcctctata
ctatatatttctcctgaatctctacgatcaaagacaatagaacggatacttctgggaaga
aatgttgtccgttttgtaatagatgaggcacactgtttttcatcctggggacaggatttc
agagttgattacttatatatcggggactttataaagacattacaggaaaggaaaaatatg
gaagaaggaatacctgtttcctgcttcacagctactgcaaagcaaaaggttatagaggat
attcgtgagtattttaaagaaaagttatcgctggacatggagattttcagctcaaatgca
tcaagaagtaatctgcgctataaggtatttcagaaagagagtgaagaagaaaaatacaat
acagtacgagatctgattgaagaaaaaaactgccctacaatcgtttatgtatcacgtacc
agaaaagcatactccctggctcaaagactggttcaagacggttatcaggcaaagccctat
cacggcaaaatggacaagcaggaaaagtctgaaaatcaggatgcatttattaggggagag
gttcaaatcatggttgcaacatctgcttttggaatgggagtagacaaaaaagatgtgggc
atggttattcattacgaaatatccgattctcttgaaaactatatacaggaagcgggaagg
gcaggaagggatgagtctgtttcggcagattgttttgtcttattcaatgatgaagacttg
agtaagcatttcattcttcttaatcaaaccaaacttagtattcaggagatacagcaggta
tggaaggcaattaaagatattaccagatttagatcaagggtatctcaatctgctttggag
attgcacgaaaggcaggttgggatgataatatcaaggagatagaaacccgtgtaactact
gcaattgcagcattagaagactctggctatctcaaacggggccagaatatgccaaggata
tatgcaaacagtatcctctctaagaatgctatggaggctattgccaagataaataattcc
ggccggttcactgaaaagcaaaagatgaatgcaactcgcattataaaaaagcttttttcc
agtaagagcagaagacacacaacggatgaagacggtgaagcgagaatagactacatctcg
gattatttggggattgtaaaagaggaagttatacagattattagtcttctcagggaagaa
aagatattggccgatacaaaagatctatccgcctttattaagagaaaggaaagtaaaaac
cgatcactagctattttgaaatcttttcgtagccttgaaggctttttgctaactattctg
gaaaatgaagaaaaaatattacatataaaagaattgaatgaacaggcagaacgaagtggt
ttcaatgatgtgactccaaataggataaagaccgtatttaatttctgggctattaaaaac
tggattaaaagacaaactgtggaatactcaaaaaaccatatagcagtcctttcccttcag
tccaaggaatggtttgaagaaaaattaacaaagcgatatgaattggcgcaatttattgtg
gagtatctttatgataaaagcattacttccgcagcaactgaagaattaaatagagatgaa
attttagttgaattttccattttagaattaaaagaagaatttgaaggcagattgctgctt
tttaatacaaaagttactgttgatgatattgaagatgcactcttttatttatcaaaaatt
gaggcattaaaaatcgagggtggctttatggtggtttataatgctcttacaattgaacgt
ctcgaaaaggataataagaagcgctacaagatagaggattatcagaaacttaatcagttt
taccagaataaagtacagcaaattcacattgtaggggaatatgctcggaaaatgataagt
gattacaaagctgcgctgcaatttgtagacgactatttccatctgaattacatatctttt
ttgaataaatattttaatggcagccaacagaatgatataagaagaaatattacacctgcc
aagttcaagcaactttttggagaactgtctccaactcaattaaagattattaatgataat
gaatcaagatatattgtagtggcggcagggccgggaagcggtaaaacaagaattctggtt
cataagctggcatcattattgctgatggaggatgtaaagcatgaacaattgctaatggtg
actttttcaaggtcagccgctaccgaatttaagatacgtttgcttaagctcattggtaat
gcagccaacttcatagaaatcaaaacatttcattcttattgttttgatttgctgggaagg
gtaggaaccttggaaaaatcggaagaagtgatccaagagactattaggagaatcaaaagt
ggagacgttgaagcaggcagaattacaaaaactgttctggtaatagatgaagcacaggat
atggatgccaatgagtttgagttaataagcgctttaatggagtataatgaagaaatgcga
gtaattgctgttggggatgatgaccagaatatttatgaattcagaggtgcaagttctaaa
tatctgaaaatactgataaatgaaaaaaatgctatgttgtatgaactggtagaaaatcac
agaagtaaatccaaccttgttcatttttcaaatcaatttgtaaaaagaattccgaataga
ttaaagaacacacctattattgcagttcaaaaggatatgggcaaaataaagcttgttaaa
taccggagctgtaatcttattacacctcttgtaaataatattctgagagaagggcttgta
ggaagtacttgtgttttaactaagatgaacgaagaagcactgcatattgcaggcctgctt
gtgaaaaatgggatacaggcaaaattaatacagtcaaatgatggtttcaatttgtataac
cttctggaagttagattttttttaagtcagcttaatttgtatgatgatatttatatgata
agtgatgatgtttgggcaggggcaaagagaagactaatagaacaatttccaaacaacccc
aatttagaaacctgtgttaatctcatcaaagattttgaggctgtaaatcctagaaataaa
tataaatcggatctcgagatttttattcgtgaatcaaagcttgaagatttctttagcgaa
aatatggaaaaaatatttgtttcaactattcacaaggctaaaggccgtgaatttgataat
gtttttttgatgctagaccgatttaatattggaactgatgaagctgtaaggcagttgtat
gttgctatgacaagggcaaaacgcaatctaaccgttcattataatggtaattatttggat
tctataaaggctgaaggacttcatattattgaagattttggtgagtatcaaccgcccggc
caatttgcaatgcaattaactttcagggatgtatggctagatttctttatgtcttgccaa
aacctgatttctgagcttaatagtggagatatacttgccgttgatgaagattgctgccgc
aattcaagaggacaagcagttttaaggttttctaaacaatttatcaatcagattaagtca
ataaagcaaaaaaactatttacctaaagcagcgaaaattagatttataatatattggaag
aaagaaacccttgattgtgaaatcaggattattctacctgaactttattttgaaagagaa
gaggatttgtaa
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