Clostridium sp. BNL1100: Clo1100_0723
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Entry
Clo1100_0723 CDS
T01708
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clb
Clostridium sp. BNL1100
Pathway
clb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clo1100_0723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clb03019
]
Clo1100_0723
03009 Ribosome biogenesis [BR:
clb03009
]
Clo1100_0723
Enzymes [BR:
clb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clo1100_0723
Messenger RNA biogenesis [BR:
clb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clo1100_0723
Ribosome biogenesis [BR:
clb03009
]
Prokaryotic type
rRNA helicases
Clo1100_0723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
DUF6857
FIMAH
NBAS_11th
Motif
Other DBs
NCBI-ProteinID:
AEY64994
UniProt:
H2JC87
LinkDB
All DBs
Position
complement(802962..804656)
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AA seq
564 aa
AA seq
DB search
MENLSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGI
PAVEKIDPQIDSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL
KKRPQIIIGTPGRVMDHMRRRTLKLEALKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ
TILFSATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDT
NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIAT
DVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDIQR
YTKSTIVPMKPPSLNEVEEKKMLNILKTLKENLKDESISKFVSHIERFIDTINNESEEQG
ENFVTSLDIAAALLKMYGEQSGNLPSEVNEIDNAVEPGSSKDMVRLFINIGSESKIQPKH
IIESLVASTGLPGKLVGAIDIFDRYSFVEVPKDFAPEVMKSMKNYTIKGKRINIEKSNAR
KKSGRGSSFNRSTPPNRRSPKKSK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttaagttttaaagatttaactctctcggatgaggtacaacgtgcaattgtg
gatatgggctttgaagaggcgacccctattcagtcccagtcaatcccatatattttggaa
ggcaatgatctgattggtcaggctcagaccggaacaggaaaaacctgtgcattcggaata
ccggcagtggaaaaaatagatccacagattgattcaattcaggttttggtcctttgtcca
acacgagagcttgctatacagtcctgcgaagaattgagaaatgtattaaaatataaggat
gggataaggattctccccgtgtatggtggacagccaattgacagacagattatggcttta
aagaaacgtccacagataattataggaaccccgggccgtgttatggaccatatgagacgt
agaactcttaaactggaagcccttaaaatgatagttcttgatgaagccgatgaaatgctg
aacatgggtttcagagaagatatagatactattttggagaaagtgccagaggacagacag
actatattattctctgctacaatgccaaaagagattctggaacttacaaaaaaatatcag
aaagatccagttcatataaagatagcccacaaggaactcaccgttccaagtatcgagcag
tattaccttgaagtaaaagaatctgcaaagcttgaagttttgtcaagattgattgatacc
aacgatatcaaactgtctcttgtattctgtaatactaaaaagagagttgacgaacttaca
gccagcctccagtccagaggtttttctgccgaagctctgcatggcgacatgcgtcaggaa
caccgtgacaaagtcatgtctcttttcagaaaaggtaactttgatatactcatcgcaaca
gatgttgctgcaaggggtatagatgttgacgacgttgaagcagtattcaactatgatctt
ccaaatgatgaagaatattatgttcacagaattggacgaaccggaagggccggaagaaca
ggaaaggcctttacatttatttcaggaagagaaatgtacaagcttagggatatacagcgt
tatacaaaatccaccattgttcctatgaagcccccaagtctcaatgaagttgaagaaaag
aaaatgttaaacatcctaaaaaccttaaaagaaaacctaaaggatgaaagcatctccaaa
ttcgtcagccacattgaacgcttcattgacacaatcaataatgaatcggaagaacagggg
gaaaactttgtaacatctcttgatattgcagctgcattattgaaaatgtatggtgaacaa
agcgggaatctgccaagtgaggttaatgaaattgacaatgcggtagaaccgggcagcagt
aaggatatggtcagattattcatcaatataggtagcgagagcaaaatacagcccaagcat
ataattgaaagtcttgtggcgtcaaccggacttccgggtaagctggtaggtgcaatagac
atatttgacaggtattcatttgtagaggttccaaaggattttgctcccgaagttatgaaa
tcaatgaagaactatactataaagggaaaacgcatcaatatagaaaaatccaatgcaaga
aagaaaagcggacggggatcgtcatttaatcgttcgacaccgcctaacagacgtagtcct
aaaaaatcaaaataa
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