Clostridium sp. BNL1100: Clo1100_3811
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Entry
Clo1100_3811 CDS
T01708
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clb
Clostridium sp. BNL1100
Pathway
clb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clo1100_3811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clb03400
]
Clo1100_3811
Enzymes [BR:
clb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clo1100_3811
DNA repair and recombination proteins [BR:
clb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clo1100_3811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3232
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEY67924
UniProt:
H2J918
LinkDB
All DBs
Position
complement(4273668..4277192)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNFFTDPLLKIDEYNTLLTNVREGKGLVSVIGPSDSQKVHLIYSLCTHLQRRGLYVTYNE
MQARRAYEDFAFFLGDDVLYYPPKETMLYNIEARSNDIIYQRTKTLLRCLEGNYKLIVMS
AEALIQMISPVELFRGGVIDFSVGLQIELDELISKLVLYGYERVETVEGKAQFAVRGGII
DIFAVNSEHPVRIELFDTDVDSIRYFDETTQRSTNSIDECRIAPARDVVYKEISKEAIIS
KIKRDLADYVKKLKQKDNSEGIKNISKRVEEDIDNLIEHHYFPGIDRYLPYILETPASVI
DYIESESIIVLDETLRITQRIENVQLEHEELAKSLLEKGGILPKGAEWAFSTDSIVDRIL
NLRTVTLSAISSNNSLIRPYNQISIPCKSGNSYQNHIDLLVDDIGQLRKKEYKIIVLSGP
SGRGHRLVETLATNEISSSYKDNPGYKIQNGEVVVTHGSLQKGFEYPTAAFVVISDIEVF
GQDKRIKKAKAKRAGNKIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSVGEVKRDYLKIRY
QEGDFLYIPTNQLDLLQKYIGSEGKTPRVNRLGGTEWAKTKSRVKESLQQLAAELIKLYA
QRQSAKGHAFCEDTVWQRQFEELFPYQETDDQLKCIDEIKRDMESERLMDRLLCGDVGYG
KTEVAIRAVFKSVMDGKQVAYLAPTTILAQQLYENFKKRMSDFPVTVDVMSRFRTPTEQK
KIVKSVKAGNTDILIGTHRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLT
LTATPIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVF
YMYNRVRGIDIKAQEIRTMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIES
GLDMPNVNTIIVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAI
KEFTEFGSGFRIAMRDLEIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRT
TDEEMAVDLNVNAYIDDEYISSEEQKIDMYKKIAAIQNENDVIDLRDELIDRYGDIPEEV
ENLMDIAYIKALAVECGFIGISQKDDIILFALRKSASTVSQYLGVLMDKYPRRIMLNASS
NPYLSFKLINSSSRENLANIKILLQYIIKLQSNV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaacttttttacagatcctctcttgaaaatagatgaatataatacccttttaacgaat
gtgcgtgaggggaaagggcttgtatcggttatcgggccgtcggattcacaaaaggtgcat
ctgatatattccctatgtactcatttacagagaagaggactgtacgtaacatacaatgaa
atgcaggccagaagggcttatgaggattttgccttttttctgggggacgatgttctgtat
taccctcccaaagagactatgctatataatatagaagccagaagcaatgatattatatat
cagagaacaaaaaccctgctgaggtgcttagagggaaactacaagttgattgtaatgtca
gctgaagcacttatacagatgatttcacctgttgaactctttagagggggagttattgat
ttctcagtaggtttacaaatagaactcgatgaactgatctcaaagcttgttttgtatgga
tatgaaagagttgaaactgttgagggcaaagcccagtttgctgtccgtggagggattata
gatatttttgcggtaaacagcgaacacccggtgcgtattgaactatttgataccgatgtt
gattctatcaggtactttgacgaaacaactcagcggtctacaaactcaattgatgagtgt
agaattgcccctgcaagagatgtagtttacaaggaaatttcaaaggaagcaataatttca
aagataaaaagagacttggcagactacgttaaaaagctgaagcagaaggacaacagtgaa
ggtattaaaaatatatcaaagcgtgttgaggaagatattgataatctgattgagcaccac
tattttcccggcattgacagatacctcccatatattctggaaactcctgcttccgtaatt
gactacattgagagtgaatcaataattgtactggatgaaaccctgagaataacccagaga
attgagaatgtccagcttgaacatgaagagcttgcaaagagtcttctggagaaaggcggt
attttgcctaaaggagcagaatgggctttttccacagactctatagtagaccgtatattg
aatttgaggacggtaacattgtccgccatttcatccaacaactcacttatcaggccgtat
aatcagatatcaataccttgtaaatcagggaactcttaccaaaaccatatagatttactt
gttgacgacataggacagctcaggaaaaaagaatataaaattatagttctttcaggcccc
agcggtagaggacacagattggttgaaacccttgcaacaaatgagatttcgtccagttac
aaagataatcccgggtataagatacagaacggagaggttgttgtaactcacggtagctta
cagaaaggctttgaataccctacagcggcctttgttgtaataagtgatattgaggtattt
ggacaggataaacgaataaaaaaggcaaaggcaaagagagcaggcaacaaaataaaggca
ttttctgacctcaacgttggtgacttcgttgtacatcaggctcacggtataggccagtat
atcggtattgaaaagctcagcgtaggtgaagttaaaagggattatcttaaaatccggtat
caggaaggagacttcctttatattcccactaaccagctggatttgctccaaaaatatatt
ggatctgaaggtaagacgcccagggtcaataggcttggtggaactgagtgggccaaaaca
aaaagccgtgtaaaggaatctctgcagcagcttgcagcagaactgataaagctttatgca
caaaggcagtctgccaaaggtcatgccttctgtgaagacacagtgtggcaaagacagttt
gaagagctgttcccataccaagaaaccgacgaccagcttaagtgtattgatgaaataaaa
agggatatggagtccgaaaggctgatggacagactcctttgcggagatgtaggctatggc
aaaacggaagtcgcaataagggctgtatttaagtctgttatggatggaaagcaggtagca
taccttgcgcctactactattctagcccagcagctgtatgaaaactttaagaagaggatg
agcgacttcccggtaacggtggacgtcatgagcagattcaggactcccacagaacagaag
aaaattgtaaaatccgttaaggcaggaaatacagatatacttattggcacacacaggctt
ctgcaaaaggatattgaatttaaggatcttgggcttctggtagttgatgaggaacaacgc
ttcggagtaacccataaagaaaagcttaaaacactaaaaccgaatgttgacgtactaaca
ttgacagctacgccaattcccagaacacttcacatgtcgttggttggaataagggatata
agtgttctggaggatccgccggaagaaagatacccggtgcagacctatgttatggaatat
aatatggagcttatccgtgatggtataatccgtgaaatggcaagaaacggtcaggttttc
tacatgtataaccgggtaaggggtattgacataaaagcacaggaaatcaggacaatgata
cctgaagccagagttgcggttgcccacggacaaatgaatgaaaaagaacttgaagatgta
atgtacggctttataaacggggaatatgacgtacttgtatgtactactattatagagtcg
gggcttgatatgccaaatgttaatactattattgtagaagatgccgacagaatgggcttg
tcccagctttatcagataagaggaagggttggaagatccaacaggcttgcatacgcctat
atcacatataaaaaggataaggttctgtcggaggtagcggagaaaagactccaggctata
aaagaatttactgaatttggttcaggctttagaatagccatgcgggatcttgaaataaga
ggagcgggaaacttgctagggccggagcaacatggtcatctggaaacagttggctacgaa
atgtactgcaagctgctggatgaagcggttcaggagctgagtggcaaggaagtacgcact
actgacgaggaaatggcagttgacttgaatgttaatgcatatattgatgatgaatatata
agctcagaagaacaaaaaattgatatgtataagaaaattgccgcaatacagaatgaaaat
gatgtaattgatttacgagatgagttaatagacaggtacggagatataccggaagaagtt
gaaaatctaatggacattgcttatatcaaggcacttgctgtggagtgcggctttattggc
atttcacagaaggacgatataatattgtttgcactgcgtaaatccgcttcaacagtgtcg
caatatctgggagtgcttatggataaataccctagaaggattatgcttaatgccagcagc
aacccgtatttgtcatttaaattaataaattcatccagcagagaaaatttggcaaatatt
aagattttgttacaatacattattaaattgcagtctaatgtataa
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