Caldicellulosiruptor acetigenus 6A: Calla_0453
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Entry
Calla_0453 CDS
T01600
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
clc
Caldicellulosiruptor acetigenus 6A
Pathway
clc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calla_0453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clc03021
]
Calla_0453
03400 DNA repair and recombination proteins [BR:
clc03400
]
Calla_0453
Enzymes [BR:
clc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calla_0453
Transcription machinery [BR:
clc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calla_0453
DNA repair and recombination proteins [BR:
clc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calla_0453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF4162
DUF7088
NIF
YlmH_1st
Motif
Other DBs
NCBI-ProteinID:
AEM73107
UniProt:
G2PY87
LinkDB
All DBs
Position
515540..515773
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AA seq
77 aa
AA seq
DB search
MLLRPGLDELLKYVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASG
KISYKYVKPVKKNEIKK
NT seq
234 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgcgaccagggcttgacgagcttttaaagtatgtggacaataaatatacactt
tctgtacttgttgcaaagagggcaagacaacttcttcagcaggcgcaaaaaaaagttgac
attaccaattttaactctgacaagtatgttacaatggcagtaaatgaggttgcctctggg
aagatttcttacaagtacgtaaagccggtgaaaaagaatgagattaaaaaataa
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