Caldicellulosiruptor acetigenus 6A: Calla_0480
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Entry
Calla_0480 CDS
T01600
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clc
Caldicellulosiruptor acetigenus 6A
Pathway
clc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calla_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clc03021
]
Calla_0480
03019 Messenger RNA biogenesis [BR:
clc03019
]
Calla_0480
Transcription machinery [BR:
clc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Calla_0480
Messenger RNA biogenesis [BR:
clc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calla_0480
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
TEP1_CUB2
AAA_22
AAA_24
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA_25
AAA
Nuc_rec_co-act
Motif
Other DBs
NCBI-ProteinID:
AEM73134
UniProt:
G2PYB4
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All DBs
Position
543838..545508
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AA seq
556 aa
AA seq
DB search
MPGSVDEFLKGKSIIELREIAKSLGIQKYSLLKKGELMEAIKNFLGSSEEDATVLEGIGK
KEKGRRGRKKKSETAEVQQTFELKSEGQESKLEETEEKEELKPSEMENKEEDNIKEQTLS
QDTQKEEEKTEKPADVSLNEEKKEESKVIELKPKKEEKREDKMQIEIPPELKELEGKVEI
GGIGEGVLEIIYEPGGGGGYGFLRDDSFVPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLP
KENEKFAGLLYVQSVNDMKPEEVAKRTPFEDLTPIFPNKRIILENKNEPKDLAVRLIDLI
APIGRGQRGLIVAPPKAGKTTLLKKIANSILTNYDDLHLIVLLIDERPEEVTDMQDSIKA
EIHYSTFDETPEHHIKVAEMVLERAMRLVECKKDVVILLDSLTRLARAYNLVEPPSGRTL
SGGLDPNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHL
DRKLSEKRIFPAIDINKSGTRREELLLSEEEKAAVDAIRRALSNFGTAETTERIISMLSQ
TKSNEEFIRKILQNLR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgggtcagttgatgagtttttaaagggaaagtctattattgaacttagagaaata
gcaaaaagtctgggtattcaaaaatattctctgctcaaaaaaggtgaattgatggaagct
attaaaaattttctgggaagttcagaagaagatgcgacagttcttgagggcataggtaaa
aaagaaaaaggtagaagaggaagaaagaagaaatcagaaactgcagaagttcagcagact
tttgaattaaagagcgaggggcaagaatcaaagcttgaagagactgaggaaaaggaagag
ttaaaaccaagtgaaatggaaaataaagaagaagataacataaaagagcaaactttgtcg
caggacacacaaaaagaagaagaaaaaactgaaaagcctgcagatgttagtttgaatgag
gagaaaaaagaagagagtaaggtaatagaattaaaacctaaaaaagaagaaaaaagagag
gataagatgcagatagaaattccaccagaattaaaagaacttgaaggtaaagtggagata
ggcggcataggagaaggagttttggaaataatttatgagcctggtggcggtggcggttac
ggatttttgcgcgacgattcgtttgtacctggcccaaacgacatatatgtttcgccatct
caaatcagaaaattcaatctcaaaacgggtgataagattagaggtcctattagacttcca
aaagaaaatgaaaagtttgcgggacttttgtatgttcagagcgtcaacgatatgaaacca
gaagaagttgcaaaacgcactccttttgaagaccttacccctattttcccaaacaaaaga
ataattttggaaaataaaaatgagcctaaggatttagcggtaagactcatagaccttatt
gcgccaattggaagaggccagagaggattaattgtagcaccgccaaaagcaggtaaaact
acactattaaagaagatagcaaatagtattctgacaaactatgatgatttgcatttgatt
gtactgctcatcgatgaaagacctgaagaggtcactgatatgcaagactcaataaaagca
gagatacattactcaacatttgatgaaactccggaacaccacataaaggttgctgaaatg
gttttagaaagggctatgagacttgttgagtgtaaaaaagatgttgtcatattgctggat
agtttgacaaggcttgcacgtgcttataacttggttgaaccaccttctggcagaacactt
tctggcggtcttgacccgaacgctcttcacaaacctaaaaagttttttggtgctgcaaga
aaccttaaagaaggtggtagtcttactatccttgcaacagcattgattgaaacagggtca
cgaatggatgatgttatatttgaagagttcaagggtactggcaacatggagttgcacctt
gacagaaaactttctgaaaaacgaatattcccagctattgatataaacaagtcagggacg
cgaagagaagaacttttgctgtctgaagaagaaaaagcagctgttgatgctatcagaaga
gcactttctaactttggaacagcagaaaccacagagagaattataagtatgctttcccaa
acaaagtcaaatgaagaatttataagaaaaatattacaaaatttaagataa
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