Caldicellulosiruptor acetigenus 6A: Calla_1309
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Entry
Calla_1309 CDS
T01600
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clc
Caldicellulosiruptor acetigenus 6A
Pathway
clc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calla_1309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clc03021
]
Calla_1309
03400 DNA repair and recombination proteins [BR:
clc03400
]
Calla_1309
Enzymes [BR:
clc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calla_1309
Transcription machinery [BR:
clc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calla_1309
DNA repair and recombination proteins [BR:
clc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calla_1309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEM73929
UniProt:
G2PXT3
LinkDB
All DBs
Position
complement(1372929..1376420)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFAAYVVIDPGDVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLAQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMIFSSEEEALLAYEHKVVGLHARIKVK
RTAQVNGEVISGLVETTVGKIILNQVIPQDLGFVDRSKRENLLKYEIDTLVDKKMLGKII
DRCIKVYGNTRTAEILDEIKELGFKFSTRGAITISVSDMVIPEVKQKLIAEAEQKVENIE
KLYRHGLISDEERYEQVISIWNQTKDKLTEELIQSLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTDKGIWVEEIRDGTEVIETLEERIIGRYAASDIVDEKTGEVIVKK
NELITEEVAKKIIDAGINRVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNDNGEERTYEIPYGARLKVNDGDYVQAGDELTEGSINPHDLLRIKGTRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDPGDTELLPGDIVEIHRFEEENDKA
IAEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacttgttcaatttcgatgctattaaaatcagtcttgcttctcctgaaaagataaga
gaatggtcgcgcggtgaggttaaaaaacccgagaccataaactatagaacactcaagcct
gaaaaagatggacttttctgtgaaaagatttttggtccaacaaaggactgggaatgccac
tgcggaaagtataaaaaggtcaaatataaaggtgttgtttgtgacaagtgcggtgttgaa
gtgacaaaagcaaaggtaagacgtgagaggatggggcacattgaacttgctgctcctgtc
tctcacatctggtatttcaaaggtgtcccaagcaggatgggtttgattttggacatgaca
ccgcgaaatttagaaaaggttttgtactttgctgcatatgtggtaattgacccgggcgat
gtaccaaatttggaaaagaaacagattctctctgaaaaagagtacagggaactaaaagaa
aaatatggcgacaggtttaaggcagggatgggagcagaggcaatcaaagagcttttgaaa
gagattgaccttgacaaactggcgcaagagctcaggcaagaacttgagactgcaacagga
cagaaaaaattaaagataatcaaaagacttgaggttgttgaagcttttagaaagtctggc
aaccgtcctgaatggatgatacttgatgttatacctgtcatcccacctgaacttcgcccc
atggtccagcttgatggcggaaggtttgcaacatctgacctaaatgacctttacagaaga
gtgataaacagaaacaataggctcaaaaaactaatggatttaggtgcaccggatataatt
atcagaaacgaaaagagaatgcttcaggaagctgttgatgctcttatagacaatggaaga
agaggaagaccagtaacaggtcctggtaacagaccgctaaaatcactatctgatatgctc
aaaggaaagcagggaaggttcagacagaatcttttggggaaaagagttgactattcagga
cgttctgttatagttgtagggcctgagcttaagatttaccaatgcggtcttccgaaagag
atggctttggagcttttcaaaccatttgtcatgaaaaaacttgttgaaaaaggaatttgc
aacaacataaaaaatgcaaaaaaagctgttgaaagacagagaagtgaagtatgggatata
ttagaagaagtaataaaagaccatccagtgctgctaaaccgagcacccactttgcacagg
cttggtattcaggcttttgaaccggtacttgtcgaaggaagggctataagacttcaccca
cttgtttgtacagcgtacaatgctgactttgacggcgaccagatggcagtacacgttcca
ctttctgccgaggctcaggctgaagcaaggtttttgatgttatctgccaacaacctgtta
aagccggcagacggcaaaccaattgtagttccgacccaggatatggttttaggaatttac
tacctcactcttgaaaagaaaggtgacaagggtgaggggatgatattctcatcagaagaa
gaagcacttttggcatatgagcacaaggttgttggtcttcatgcaagaataaaggttaaa
agaacagcacaagtaaatggagaagttatctctggacttgttgagacaacagttggcaaa
atcatattaaatcaggtaataccgcaggaccttggttttgttgatagaagcaagagagaa
aatcttctcaagtatgaaattgatacacttgttgacaaaaagatgcttggaaaaatcatt
gacaggtgtataaaggtttatggaaatacccgaacagcagagatactggacgagataaaa
gaacttggatttaaattttcaacaagaggagcaattaccatctcagtttcggatatggta
attccagaagtcaagcaaaagctcatagcagaggctgaacaaaaggttgagaacattgaa
aaactatacagacatggtttgatttctgacgaagaaagatatgaacaggtaatctctata
tggaaccagacaaaagacaagcttactgaagaacttatccagagccttgatgagttcaat
ccaatattcatgatggcaaactcgggtgcaagaggttccaaaaatcagatatcacagctt
gctggtatgaggggactgatggcaaatccgtctggtaagacaatagagatgccgattaag
tcaaacttcagagaaggactcaatgttatagagtttttcatctcaacacacggtgcacga
aaagggcttgcggacacagcactgcgaacagcagactcagggtatttgacaagaaggctt
gtcgacgttgcacaggatataattgtaagggaagaggactgtggaacagacaaaggtata
tgggttgaagagataagagatggcacagaggtaattgaaacacttgaagagagaattatt
ggaagatatgcggcttctgatattgttgatgaaaaaacaggtgaggtaatagtaaagaaa
aatgagctcattacagaagaagtagctaagaagataattgatgcaggaatcaacagggta
tatgtaaggtcagttttagagtgcaagacaaggtacggtgtttgtacaaaatgttatgga
cttgaccttggcacaggtcagccggtaaatgttggtgaagcagttggtataatcgcagca
caggctataggtgagccgggtactcagcttacaatgagaacattccacacaggtggtatt
gctgggcaggacattacgcaaggtcttccaagggttgaggagctgttcgaggcaagaaaa
ccaaaaggtgttgctgttatttctgaaatagaagggtatgtttcaataaaagaagacaaa
aagaggacaataacagtcagaaatgacaatggtgaagagagaacgtatgagataccgtat
ggagcaagattgaaggtgaacgatggcgattatgttcaggcaggagatgaactgacagaa
ggttcgataaatccgcacgaccttttgaggataaaaggaacaagaggtgttcagagctat
cttttagcagaggttcagaaagtttacaagatgcagggtgttgacataaacgacaagcac
atagagataataatcagacagatgatgaagaaggtcaagatagaagaccctggtgatacc
gaacttttgcctggcgacattgtagagatacacaggtttgaagaagagaacgacaaggca
atagcagaaggaaaacgtcctgcgcttggcagaagggtgcttcttggtataacaaaagca
gcactgtctactgagtcattcttgtctgctgcgtcattccaggagacaacaagggtattg
acagatgcagcaataaaagggaaggtcgacccgctgattggtcttaaggaaaatgtcatc
attggtaagctaattcctgcaggaactggaatggcaaagtacagaaacattgttattgaa
gaaaatcagtaa
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integrated database retrieval system
