Clostridium sporogenes: CLSPO_c01590
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Entry
CLSPO_c01590 CDS
T03905
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cld
Clostridium sporogenes
Pathway
cld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSPO_c01590 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cld03021
]
CLSPO_c01590 (rho)
03019 Messenger RNA biogenesis [BR:
cld03019
]
CLSPO_c01590 (rho)
Transcription machinery [BR:
cld03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CLSPO_c01590 (rho)
Messenger RNA biogenesis [BR:
cld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLSPO_c01590 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
Spore_III_AA
SAP
AAA_22
AAA_25
WHD_MCM2
Motif
Other DBs
NCBI-ProteinID:
AKC60896
UniProt:
A0A7U5D242
LinkDB
All DBs
Position
165811..167256
Genome browser
AA seq
481 aa
AA seq
DB search
MINKDYESMTVKELREIAKKLDIKNISKFKKSELIQEIKTSQSTAIEKDGKILVEKISPK
VIKNGNYIHNKITKENSVNEEKTNSLMKNSEENKAERLKEMINESQRAKGVLEIIENNNY
GFLRGQNYLSGPEDIYVSPSQIRRFNLRTGDEVEGKVRIPKDGEKFKALIYVERVNGENP
EKAVGRKPFESLVPIYPNERIKLETSSQDLSTRLMDIISPIGKGQRGMIVAPPKAGKTTL
LKKIAQSISRNNPLCKLIVLLIDERPEEVTDMQRSIKGEVIYSTFDEEPEHHTKVTYMVL
ERAKRMVEQGQDVVILLDSITRLSRAYNLTITPTGRTLSGGLDPGALVMPKKFFGAARNI
ENGGSLTILATALTETGSRMDDMIFEEFKGTGNMEVHLNRKLQERRIFPALDIYKSGTRR
DDLLFTDSLEKETAFNIRKLLYEENNVENVTEQVLSILSKTKTNEEFINIISKMDMNKNN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttgataaataaggattatgaaagcatgaccgttaaagaattaagagaaatagctaaaaag
cttgatataaaaaatatatctaagttcaaaaaaagtgaacttatacaagaaataaaaact
tcacagtcaacagctatagagaaagatgggaaaattttagttgaaaaaatatcacctaaa
gttataaaaaatggaaactatatacataataaaatcactaaagaaaatagtgtcaatgaa
gaaaaaactaattctcttatgaaaaacagtgaagaaaataaagcggaaagattaaaagag
atgataaatgaatcgcaaagagctaaaggtgttttggagattatagaaaataataattat
gggtttttaagaggacaaaattatttgtcaggtcccgaagatatatatgtatctccatca
caaataagaagatttaatttaagaacaggtgacgaagttgaaggaaaggttagaatacca
aaggatggagaaaagtttaaagctttaatatacgtagaaagggtaaatggagaaaatcct
gaaaaagcagtaggaagaaaaccttttgaaagcttagtacctatatatcctaatgaaagg
attaaacttgaaacaagttcacaagacttatctacaagattaatggatataatatcacct
ataggaaaaggacaaagaggaatgatagtagcccctcctaaagcaggtaaaactactctt
ctaaaaaagatagcccaaagcatttcacgaaataatccattatgtaaacttatagtactt
ttaattgatgagagaccagaagaagtaacagatatgcaaagatctattaaaggagaagta
atatactcaacttttgatgaagagccagagcatcataccaaggttacttatatggtttta
gaaagagcaaaaaggatggtagagcaaggacaggatgttgttatattattggatagtata
acaagattgtctagagcatataatttaactattaccccaacaggtaggacattatcaggt
ggattagatcctggcgcattagtaatgccaaagaaattttttggggccgctagaaatatt
gaaaacggtggaagcttaaccatattagctacagctttaactgaaacaggaagtagaatg
gatgacatgatatttgaggagtttaagggtactggaaatatggaagtacatcttaataga
aaacttcaagaaagaagaatattccctgctttagatatttataaatcaggtacaagaaga
gatgatttattatttacagattctttagaaaaagaaactgcatttaatataagaaagctt
ctttatgaggaaaataatgtggaaaatgtaactgaacaagttttaagtatattatctaaa
actaagaccaatgaggaatttataaatataataagcaaaatggatatgaataaaaataat
aaatag
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